Factsheet for TraesCS4D01G095100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G220400.2	Wheat	cytosol, plastid	93.0	97.41
TraesCS5D01G307400.1	Wheat	cytosol	96.71	94.76
Os09t0515200-01	Rice	cytosol	87.65	83.2
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	86.83	80.23
EER99181	Sorghum	plastid	86.83	80.23
GSMUA_Achr11P...	Banana	cytosol	77.78	75.0
TraesCS4B01G099100.1	Wheat	golgi	97.12	74.68
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	69.14	72.41
KRG96935	Soybean	cytosol, nucleus	69.14	72.41
Bra038919.1-P	Field mustard	cytosol	42.8	70.27
VIT_06s0004g03190.t01	Wine grape	nucleus	70.37	69.8
CDY41710	Canola	cytosol	69.96	69.39
Bra038162.1-P	Field mustard	cytosol	69.96	69.39
CDY42368	Canola	cytosol	69.55	68.98
CDY04377	Canola	cytosol, extracellular	69.14	68.57
AT1G56450.1	Thale cress	cytosol	69.14	68.29
CDY68783	Canola	cytosol	68.31	67.76
PGSC0003DMT400020843	Potato	cytosol	67.9	67.35
Solyc11g069150.1.1	Tomato	extracellular	67.49	66.94
CDY39004	Canola	extracellular	69.14	64.37
Bra027934.1-P	Field mustard	cytosol	69.96	64.15
CDY54948	Canola	cytosol	59.67	62.23
Zm00001d021147_P002	Maize	cytosol, plastid	84.77	47.58

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS4D01G095100	EnsemblPlants:TraesCS4D01G095100.1	TIGR:cd03760	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:70359561..70361533

Molecular Weight (calculated)

27018.3 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.349

Length

243 amino acids

Sequence
(BLAST)

001: MDASAAAAGG GDGTQRTLNP YVTGNSVIAM KYKDGVIMAC DTGASYGSTL RYKSVERIKE VGKHSLIGGS GEFSDFQEIL RYLDELTLND HMWDDGNSLG
101: PKEIHAYLTR VMYNRRNKFD PLWNSLVLGG VKKGPKGDEK YLGMVNMIGT HFEENHIATG FGNHMAIPIL RGEWREDMTF EEAVKLIEKC LLVLLYRDRS
201: SINKFQIAKI TTEGSTIYPP YALKTNWGFA AFENPSKGAV GTW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.