CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68783	Canola	cytosol	97.96	97.96
CDY04377	Canola	cytosol, extracellular	97.14	97.14
CDY42368	Canola	cytosol	96.73	96.73
AT1G56450.1	Thale cress	cytosol	93.06	92.68
Bra027934.1-P	Field mustard	cytosol	100.0	92.45
CDY39004	Canola	extracellular	96.33	90.42
CDY54948	Canola	cytosol	84.08	88.41
KRG96935	Soybean	cytosol, nucleus	77.96	82.33
VIT_06s0004g03190.t01	Wine grape	nucleus	82.04	82.04
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	77.55	81.9
PGSC0003DMT400020843	Potato	cytosol	79.59	79.59
Solyc11g069150.1.1	Tomato	extracellular	78.78	78.78
GSMUA_Achr11P...	Banana	cytosol	78.37	76.19
TraesCS4A01G220400.2	Wheat	cytosol, plastid	68.57	72.41
TraesCS4D01G095100.1	Wheat	cytosol	69.39	69.96
TraesCS5A01G301400.1	Wheat	unclear	69.39	69.67
TraesCS5B01G299900.1	Wheat	cytosol	69.39	69.67
TraesCS5D01G307400.1	Wheat	cytosol	69.39	68.55
Os09t0515200-01	Rice	cytosol	71.43	68.36
EER99181	Sorghum	plastid	71.02	66.16
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	70.2	65.4
HORVU5Hr1G078810.1	Barley	plastid	68.57	56.0
TraesCS4B01G099100.1	Wheat	golgi	69.39	53.8
Zm00001d021147_P002	Maize	cytosol, plastid	68.57	38.8

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:A0A078HT41	UniProt:A0A078HT41	EnsemblPlants:CDY41710	ProteinID:CDY41710
ProteinID:CDY41710.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00073421001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EF1AB7	:	:	:	:	:

Description

BnaA09g15380DProteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HT41]

Coordinates

chrLK032504:-:97710..99807

Molecular Weight (calculated)

27543.8 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.320

Length

245 amino acids

Sequence
(BLAST)

001: MTFTIPIDNG DALKNAEADS QRTLYPYVTG TSIVAIKYKD GVLMASDMGG SYGSTLRYKN IERVKAIGKH SLLGASGEIS DFQEILRYLD ELVLNDNMWD
101: DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN TLVLGGVKNG ESYLGMVSMI GVSFEDNHVA TGFGNHLARP ILRDEWRADL SFEDGVKLLE KCMRVLLYRD
201: RSAINKLQIA KITEEGVTVS QPYSLKTFWE FQAFHNPTAG AQGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.