CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41710	Canola	cytosol	97.96	97.96
CDY04377	Canola	cytosol, extracellular	95.92	95.92
CDY42368	Canola	cytosol	95.51	95.51
AT1G56450.1	Thale cress	cytosol	92.65	92.28
CDY39004	Canola	extracellular	95.1	89.27
CDY54948	Canola	cytosol	82.86	87.12
KRG96935	Soybean	cytosol, nucleus	78.37	82.76
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	77.96	82.33
VIT_06s0004g03190.t01	Wine grape	nucleus	81.63	81.63
PGSC0003DMT400020843	Potato	cytosol	79.59	79.59
Solyc11g069150.1.1	Tomato	extracellular	78.78	78.78
GSMUA_Achr11P...	Banana	cytosol	77.55	75.4
TraesCS4A01G220400.2	Wheat	cytosol, plastid	66.94	70.69
TraesCS4D01G095100.1	Wheat	cytosol	67.76	68.31
TraesCS5B01G299900.1	Wheat	cytosol	67.76	68.03
TraesCS5A01G301400.1	Wheat	unclear	67.76	68.03
TraesCS5D01G307400.1	Wheat	cytosol	67.76	66.94
Os09t0515200-01	Rice	cytosol	69.8	66.8
EER99181	Sorghum	plastid	69.39	64.64
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	68.57	63.88
HORVU5Hr1G078810.1	Barley	plastid	66.94	54.67
TraesCS4B01G099100.1	Wheat	golgi	67.76	52.53
Zm00001d021147_P002	Maize	cytosol, plastid	66.94	37.88

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:A0A078JMS6	UniProt:A0A078JMS6	EnsemblPlants:CDY68783	ProteinID:CDY68783
ProteinID:CDY68783.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00077646001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EEF167	:	:	:	:	:

Description

BnaCnng60490DProteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078JMS6]

Coordinates

chrLK037966:+:1160..2760

Molecular Weight (calculated)

27583.9 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.336

Length

245 amino acids

Sequence
(BLAST)

001: MTFTIPIDNG DALKNAETDS QRTLYPYVTG TSIVAIKYKE GVLMASDMGG SYGSTLRYKN IERVKAIGKH SLLGASGEIS DFQEILRYLD ELVLNDNMWD
101: DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN TLVLGGVKNG QSYLGMVSMI GVSFEDNHVA TGFGNHLARP ILRDEWHADL SFEDGVKLLE KCMRVLLYRD
201: RSAINKLQIS KITEEGVTVS QPYSLKTFWE FQAFHNPTAG AQGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.