CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038919.1-P	Field mustard	cytosol	60.94	95.95
CDY04377	Canola	cytosol, extracellular	90.13	85.71
CDY42368	Canola	cytosol	89.7	85.31
CDY41710	Canola	cytosol	88.41	84.08
CDY68783	Canola	cytosol	87.12	82.86
CDY39004	Canola	extracellular	90.56	80.84
AT1G56450.1	Thale cress	cytosol	84.55	80.08
KRG96935	Soybean	cytosol, nucleus	69.96	70.26
VIT_06s0004g03190.t01	Wine grape	nucleus	73.82	70.2
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	69.53	69.83
PGSC0003DMT400020843	Potato	cytosol	71.67	68.16
Solyc11g069150.1.1	Tomato	extracellular	70.82	67.35
GSMUA_Achr11P...	Banana	cytosol	69.96	64.68
TraesCS4A01G220400.2	Wheat	cytosol, plastid	61.37	61.64
TraesCS4D01G095100.1	Wheat	cytosol	62.23	59.67
TraesCS5A01G301400.1	Wheat	unclear	62.23	59.43
TraesCS5B01G299900.1	Wheat	cytosol	62.23	59.43
TraesCS5D01G307400.1	Wheat	cytosol	62.23	58.47
Os09t0515200-01	Rice	cytosol	63.52	57.81
EER99181	Sorghum	plastid	63.52	56.27
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	62.66	55.51
HORVU5Hr1G078810.1	Barley	plastid	61.8	48.0
TraesCS4B01G099100.1	Wheat	golgi	62.66	46.2
Zm00001d021147_P002	Maize	cytosol, plastid	60.94	32.79

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:A0A078IZM6	UniProt:A0A078IZM6	EnsemblPlants:CDY54948	ProteinID:CDY54948
ProteinID:CDY54948.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00014852001	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EEED68
SEG:seg	:	:	:	:	:

Description

BnaA03g60760DProteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078IZM6]

Coordinates

chrLK033363:+:34563..36406

Molecular Weight (calculated)

26405.5 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.239

Length

233 amino acids

Sequence
(BLAST)

001: MSFVFLTFTI PIDNGDSVNN AEADSQKTLY PYVTGTSIVA IKYKDAVLMA SDMGGSYGST LRYKNIERRR LLILRYLDEL VLNDNMWDDG NSLRPKEVHN
101: YLTCVMYNRR NKFNPLCNTL VLGGVNNGES YPGMVSMIGV SFEDNHVATG FGNHLARPIL RDEWHADVSF EDGVKLLEKC MCVLLYRDRS AINKLQIAKI
201: TEEGVTVSQP YSLKTFWEYK AFHNPTAGAE GFW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.