CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	96.58	96.58
TraesCS4A01G220400.2	Wheat	cytosol, plastid	78.71	89.22
TraesCS5B01G299900.1	Wheat	cytosol	81.75	88.11
TraesCS5A01G301400.1	Wheat	unclear	81.75	88.11
Os09t0515200-01	Rice	cytosol	85.17	87.5
TraesCS5D01G307400.1	Wheat	cytosol	82.13	87.1
TraesCS4D01G095100.1	Wheat	cytosol	80.23	86.83
GSMUA_Achr11P...	Banana	cytosol	72.62	75.79
KRG96935	Soybean	cytosol, nucleus	65.4	74.14
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	65.02	73.71
Bra038919.1-P	Field mustard	cytosol	40.68	72.3
VIT_06s0004g03190.t01	Wine grape	nucleus	66.92	71.84
HORVU5Hr1G078810.1	Barley	plastid	81.37	71.33
CDY41710	Canola	cytosol	66.16	71.02
Bra038162.1-P	Field mustard	cytosol	66.16	71.02
AT1G56450.1	Thale cress	cytosol	66.16	70.73
CDY42368	Canola	cytosol	65.78	70.61
PGSC0003DMT400020843	Potato	cytosol	65.4	70.2
CDY04377	Canola	cytosol, extracellular	65.4	70.2
CDY68783	Canola	cytosol	64.64	69.39
Solyc11g069150.1.1	Tomato	extracellular	64.64	69.39
TraesCS4B01G099100.1	Wheat	golgi	80.61	67.09
CDY39004	Canola	extracellular	65.78	66.28
Bra027934.1-P	Field mustard	cytosol	66.16	65.66
CDY54948	Canola	cytosol	56.27	63.52

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	EntrezGene:8059004	UniProt:C5X5E3	EnsemblPlants:EER99181	ProteinID:EER99181
ProteinID:EER99181.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005839	GO:GO:0005840	GO:GO:0006508	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0022626	GO:GO:0046686	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3002G263800
SUPFAM:SSF56235	unigene:Sbi.6866	UniParc:UPI0001A83C7E	RefSeq:XP_002462660.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:64845719..64848119

Molecular Weight (calculated)

28839.3 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.327

Length

263 amino acids

Sequence
(BLAST)

001: MDGLSKTIGG GGPSVPAGSH PAGGSQAAAG GGATQRTQYP YVTGTSVIAL KYKDGVIMAC DTGASYGSTL RYKSVERIKA VGKHSIIGAS GEYSDFQEIL
101: RYLDELTLSD HMWDDGNSLG PKEIHSYLTR VMYNRRNKFD PLWNSLVLGG VKKGPKGDEK YLGMVNMIGT HFEENHVATG FGNHLAIPIL RAEWREDMTF
201: EEAVKLVEKC LLVLLYRDRS SINKFQIAKI TTEGSTIYPP YSLKTYWGFT HFENPAQGAV GSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.