Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04377 | Canola | cytosol, extracellular | 92.68 | 93.06 |
| CDY41710 | Canola | cytosol | 92.68 | 93.06 |
| CDY42368 | Canola | cytosol | 92.68 | 93.06 |
| Bra038162.1-P | Field mustard | cytosol | 92.28 | 92.65 |
| CDY68783 | Canola | cytosol | 92.28 | 92.65 |
| Bra038919.1-P | Field mustard | cytosol | 53.66 | 89.19 |
| CDY39004 | Canola | extracellular | 92.28 | 86.97 |
| Bra027934.1-P | Field mustard | cytosol | 92.68 | 86.04 |
| CDY54948 | Canola | cytosol | 80.08 | 84.55 |
| KRG96935 | Soybean | cytosol, nucleus | 77.64 | 82.33 |
| KRH68696 | Soybean | cytosol, endoplasmic reticulum, nucleus | 76.83 | 81.47 |
| VIT_06s0004g03190.t01 | Wine grape | nucleus | 79.67 | 80.0 |
| PGSC0003DMT400020843 | Potato | cytosol | 77.64 | 77.96 |
| Solyc11g069150.1.1 | Tomato | extracellular | 76.83 | 77.14 |
| GSMUA_Achr11P... | Banana | cytosol | 77.64 | 75.79 |
| TraesCS4A01G220400.2 | Wheat | cytosol, plastid | 66.67 | 70.69 |
| TraesCS5A01G301400.1 | Wheat | unclear | 68.7 | 69.26 |
| TraesCS5B01G299900.1 | Wheat | cytosol | 68.7 | 69.26 |
| TraesCS4D01G095100.1 | Wheat | cytosol | 68.29 | 69.14 |
| TraesCS5D01G307400.1 | Wheat | cytosol | 68.7 | 68.15 |
| Os09t0515200-01 | Rice | cytosol | 69.92 | 67.19 |
| EER99181 | Sorghum | plastid | 70.73 | 66.16 |
| Zm00001d006125_P002 | Maize | cytosol, peroxisome, plastid | 70.33 | 65.78 |
| HORVU5Hr1G078810.1 | Barley | plastid | 67.89 | 55.67 |
| TraesCS4B01G099100.1 | Wheat | golgi | 68.7 | 53.48 |
| Zm00001d021147_P002 | Maize | cytosol, plastid | 68.29 | 38.8 |
Protein Annotations
| MapMan:19.2.6.1.2.7 | Gene3D:3.60.20.10 | EntrezGene:842098 | UniProt:A0A178WJT5 | ProteinID:AAG51500.1 | ProteinID:AEE33397.1 |
| EMBL:AF043538 | EMBL:AF378880 | EMBL:AK221762 | ArrayExpress:AT1G56450 | EnsemblPlantsGene:AT1G56450 | RefSeq:AT1G56450 |
| TAIR:AT1G56450 | RefSeq:AT1G56450-TAIR-G | EnsemblPlants:AT1G56450.1 | TAIR:AT1G56450.1 | EMBL:AY045596 | EMBL:AY052739 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005839 |
| GO:GO:0005840 | GO:GO:0006508 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019774 | GO:GO:0022626 | GO:GO:0046686 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 |
| RefSeq:NP_176040.1 | InterPro:Ntn_hydrolases_N | ProteinID:OAP17392.1 | Symbol:PBG1 | PFAM:PF00227 | PIRSF:PIRSF001213 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00854 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF5 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_endopept_cplx_B | InterPro:Proteasome_suB-type |
| InterPro:Proteasome_sua/b | UniProt:Q7DLR9 | SUPFAM:SSF56235 | MEROPS:T01.987 | UniParc:UPI00000A502E | EMBL:Y13696 |
Description
PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
Coordinates
chr1:+:21141633..21144458
Molecular Weight (calculated)
27652.9 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.341
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.