Factsheet for Zm00001d006125_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99181	Sorghum	plastid	96.58	96.58
TraesCS4A01G220400.2	Wheat	cytosol, plastid	78.71	89.22
TraesCS5B01G299900.1	Wheat	cytosol	81.75	88.11
TraesCS5A01G301400.1	Wheat	unclear	81.75	88.11
Os09t0515200-01	Rice	cytosol	85.17	87.5
TraesCS4D01G095100.1	Wheat	cytosol	80.23	86.83
TraesCS5D01G307400.1	Wheat	cytosol	81.75	86.69
GSMUA_Achr11P...	Banana	cytosol	72.62	75.79
KRG96935	Soybean	cytosol, nucleus	65.4	74.14
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	64.64	73.28
VIT_06s0004g03190.t01	Wine grape	nucleus	66.92	71.84
Bra038919.1-P	Field mustard	cytosol	40.3	71.62
HORVU5Hr1G078810.1	Barley	plastid	81.37	71.33
AT1G56450.1	Thale cress	cytosol	65.78	70.33
PGSC0003DMT400020843	Potato	cytosol	65.4	70.2
CDY41710	Canola	cytosol	65.4	70.2
Bra038162.1-P	Field mustard	cytosol	65.4	70.2
CDY42368	Canola	cytosol	65.02	69.8
Solyc11g069150.1.1	Tomato	extracellular	64.64	69.39
CDY04377	Canola	cytosol, extracellular	64.64	69.39
CDY68783	Canola	cytosol	63.88	68.57
TraesCS4B01G099100.1	Wheat	golgi	80.61	67.09
CDY39004	Canola	extracellular	65.02	65.52
Bra027934.1-P	Field mustard	cytosol	65.4	64.91
CDY54948	Canola	cytosol	55.51	62.66
Zm00001d021147_P002	Maize	cytosol, plastid	84.41	51.27

Protein Annotations

EntrezGene:100192865	MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	UniProt:B4FCX3	EMBL:BT034961	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONM22855.1	ProteinID:ONM22856.1
PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.A13
UniParc:UPI00017B64C1	EnsemblPlantsGene:Zm00001d006125	EnsemblPlants:Zm00001d006125_P002	EnsemblPlants:Zm00001d006125_T002	SEG:seg	:

Description

Proteasome subunit beta type

Coordinates

chr2:-:199259912..199262530

Molecular Weight (calculated)

28914.4 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.319

Length

263 amino acids

Sequence
(BLAST)

001: MDGFSKTIGG SGPNVPAGSH PAGGSQAAAG GGATQRTQYP YVTGTSVIAL KYKDGVIMAC DTGASYGSTL RYKSVERIKA VGKHSIIGAS GEFSDFQEIL
101: RYLDELTLSD HMWDDGNSLG PKEIHSYLTR VMYNRRNKFD PLWNSLVLGG VKKGPKGDEK YLGMVNMIGT HFEENHVATG FANHLAIPIL RAEWREDMTF
201: EEAVKLVEKC LLVLLYRDRS SINKFQIAKI TTEGSTIYPP YSLKTYWGFS HFENPAQGAV GSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.