CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	44.55	46.23
KRH55899	Soybean	endoplasmic reticulum, nucleus	68.32	23.39
KRH25643	Soybean	endoplasmic reticulum, nucleus	68.32	23.39
GSMUA_Achr11P...	Banana	cytosol	58.42	19.93
Zm00001d015259_P001	Maize	cytosol	57.43	19.55
Zm00001d053881_P001	Maize	mitochondrion, plastid	57.43	19.51
EES04513	Sorghum	cytosol	57.43	19.46
Os02t0146700-02	Rice	plasma membrane	56.77	19.15
Os06t0699900-01	Rice	plasma membrane	56.44	18.98
Os09t0326800-01	Rice	plasma membrane	55.78	18.97
TraesCS6A01G116500.1	Wheat	golgi, unclear	55.45	18.77
TraesCS6D01G105500.1	Wheat	golgi	55.45	18.77
HORVU6Hr1G021020.1	Barley	cytosol	55.45	18.71
TraesCS6B01G144500.1	Wheat	cytosol	55.45	18.58
TraesCS7A01G421600.1	Wheat	mitochondrion	46.53	17.26
TraesCS7D01G413900.1	Wheat	mitochondrion	46.2	16.85
TraesCS7B01G321900.1	Wheat	cytosol	47.19	16.49
TraesCS7A01G421700.1	Wheat	cytosol	45.87	15.8
TraesCS7B01G322000.1	Wheat	cytosol	45.21	15.57
TraesCS7D01G413800.1	Wheat	cytosol	22.77	11.13
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	11.22	5.8
KRH41754	Soybean	nucleus	14.52	4.37
KRH60454	Soybean	endoplasmic reticulum	14.19	4.27
CDX99107	Canola	cytosol	3.3	3.86
Bra003811.1-P	Field mustard	endoplasmic reticulum	2.31	2.85
CDY65736	Canola	extracellular	2.31	1.72
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	0.66	1.38
CDY33144	Canola	extracellular	0.99	0.96
Solyc10g008170.2.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400056260	Potato	cytosol	0.0	0.0
AT4G08140.1	Thale cress	cytosol	0.0	0.0
KRH30269	Soybean	cytosol	0.0	0.0
KRH30250	Soybean	cytosol	0.0	0.0
CDY72396	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A0R0JZ49	EMBL:ACUP02002879	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:GLYMA_05G077400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	GO:GO:0034515	GO:GO:0043161	InterPro:IPR011989	EnsemblPlants:KRH57675
ProteinID:KRH57675	ProteinID:KRH57675.1	PANTHER:PTHR10943	PANTHER:PTHR10943:SF9	SUPFAM:SSF48371	TMHMM:TMhelix
UniParc:UPI0006EDF34A	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:10052624..10055138

Molecular Weight (calculated)

34126.2 Da

IEP (calculated)

7.411

GRAVY (calculated)

0.160

Length

303 amino acids

Sequence
(BLAST)

001: MDSVEATAEV SKTFNEKIRK YCDMTLLSCG YAGTENVLKV QNLLGHCSQH LDKGENHQGS AVLEIAMVAM AEELGLEMTI RSLEHLLQYG EQNICQAVPL
101: ALGLLCISNP KVNVMDTLSR LSHDTKLEVA TVRCGCYLLG SNRCWNKKCL NCWHASQSFK LLLQGYQPSI LCKLSLSFPP YFLISTIFMV TYFLLPYLLV
201: RTVQAFPTEL TRLARLITML HACLDMKAIV LGKFHYVLYL FPRMLLTMDE NLKPLSVPAR THSTPVLLAT GDKAELATEK YIPLSPILEG FIILKENPDY
301: RQE

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.