Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 98.43 | 98.21 |
| EES04513 | Sorghum | cytosol | 98.2 | 97.76 |
| Os02t0146700-02 | Rice | plasma membrane | 93.15 | 92.32 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 91.91 | 91.4 |
| TraesCS6D01G105500.1 | Wheat | golgi | 91.8 | 91.28 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 91.57 | 90.76 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 91.69 | 90.27 |
| GSMUA_Achr11P... | Banana | cytosol | 82.13 | 82.32 |
| Solyc07g053650.2.1 | Tomato | nucleus | 72.13 | 78.1 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 76.29 | 76.72 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 76.63 | 76.63 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 75.96 | 76.38 |
| PGSC0003DMT400024306 | Potato | cytosol | 76.52 | 76.0 |
| AT2G20580.1 | Thale cress | cytosol | 73.03 | 72.95 |
| CDY35187 | Canola | cytosol, extracellular | 72.92 | 72.76 |
| Bra011030.1-P | Field mustard | cytosol | 72.81 | 72.73 |
| CDY38389 | Canola | cytosol, extracellular | 72.81 | 72.65 |
| Bra024200.1-P | Field mustard | cytosol | 72.58 | 72.5 |
| CDY29907 | Canola | extracellular | 72.47 | 72.39 |
| CDX92875 | Canola | extracellular | 72.47 | 72.39 |
| AT4G28470.1 | Thale cress | cytosol | 72.25 | 72.17 |
| CDY05774 | Canola | cytosol | 72.25 | 71.76 |
| CDY31952 | Canola | plasma membrane | 67.64 | 70.33 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 64.94 | 69.39 |
| CDX97442 | Canola | cytosol | 66.85 | 67.38 |
| Bra010366.1-P | Field mustard | cytosol | 66.85 | 67.16 |
| CDY14239 | Canola | cytosol, extracellular | 66.63 | 66.78 |
| Solyc10g008180.1.1 | Tomato | plastid | 54.61 | 66.48 |
| AT4G08140.1 | Thale cress | cytosol | 5.96 | 63.1 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.67 | 63.01 |
| PGSC0003DMT400056260 | Potato | cytosol | 12.02 | 59.44 |
| KRH57675 | Soybean | cytosol | 19.55 | 57.43 |
| Solyc10g008170.2.1 | Tomato | cytosol | 12.81 | 56.44 |
| CDY72396 | Canola | cytosol | 8.2 | 50.69 |
| CDX99107 | Canola | cytosol | 11.46 | 39.38 |
| KRH30269 | Soybean | cytosol | 8.99 | 39.02 |
| CDY33144 | Canola | extracellular | 12.02 | 34.19 |
| CDY65736 | Canola | extracellular | 13.03 | 28.57 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.15 | 19.31 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.83 | 17.48 |
| Zm00001d049357_P001 | Maize | plasma membrane | 16.74 | 15.08 |
| Zm00001d024342_P001 | Maize | plasma membrane | 16.74 | 15.04 |
| Zm00001d002373_P006 | Maize | cytosol, plasma membrane | 16.4 | 14.48 |
| Zm00001d026265_P002 | Maize | plasma membrane | 16.63 | 14.48 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100384330 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | UniProt:A0A1D6H0T6 | ProteinID:AQK68504.1 |
| ProteinID:AQK68510.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 |
| GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 |
| InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt |
| SUPFAM:SSF48371 | UniParc:UPI0004DEBC97 | EnsemblPlantsGene:Zm00001d015259 | EnsemblPlants:Zm00001d015259_P001 | EnsemblPlants:Zm00001d015259_T001 | SEG:seg |
Description
26S proteasome non-ATPase regulatory subunit 2 homolog A
Coordinates
chr5:+:81752266..81766811
Molecular Weight (calculated)
96993.2 Da
IEP (calculated)
5.016
GRAVY (calculated)
-0.010
Length
890 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPENPSPA APAEPSQPPP PAAAAKGKRK KDEKKDDDLS EEDLALKEQL ELYVVRAQDA DPGVQKLALE SMRQEIRSAT SSMTSVPKPL KFLRPHFGTL
101: KSYFETMPES ELKKYMADIL SVLALTMSVE GERESLKYRL LGSEGDIGSW GHEYVRNLAG EIAQEFQKRQ DDDLHALMVL VQQIVSFHMK HNAEPEAVDL
201: LMEVEDLDLL VEHVDATNYK RACLYLTSSS KFLPAPDDSL ALDIAYTIYM KFGDLASALR ISLQLEKSVQ YVKQVYTATD DLLLKKQFSY LIARHGLAME
301: IDDEISTDDN DKEALQEIVN NTKLSEGYLT LARDIEVMEP KSPEDIYKVH LIDGRGASSS LDSARQNLAA TFVNAFVNAG FGKDKLMTAP SDSPSSGSSG
401: NWLFKNKEHG KASAAASLGM ILLWDTDSGL AQLDKYLHSN DTHVVAGALL GIGIVTCGVK SDCDPAFAIL MEYIGKDDSN IRIGAILGLG IAYAGSQKEE
501: LKMHLSAVLG DSQSPLEVLV FSAIALGLVF VGSCNEEIAQ SIIFALMERS EAELAEPIIR LLPVALGLLY LGKQDSVEAT AEVSKTFDEK IGKYCDVTLM
601: SLAYAGTGNV LKVQKLLGIC SQHLEKGETH QGPAVLGIAL IAMAEELGAE MAVRSLERLL QYGEQNIRRA VPLALGILCI SNPKVNVMDT LSRLSHDADA
701: DVSMAAIISL GLIGAGTNNA RIAAMLRNLS SYYYKEAAHL FCVRIAQGLV HLGKGLLTLS PYHSDRFLLS PMALGGLVTV LHACLDMKST ILGKYHYILY
801: IIVLAMQPRM LLTVDEDLKP LSVPVRVGQA VDVVGQAGRP KTITGFQTHS TPVLLAAGER AELATEKYIP LTPVLEGFVI LKKNPEYHEE
101: KSYFETMPES ELKKYMADIL SVLALTMSVE GERESLKYRL LGSEGDIGSW GHEYVRNLAG EIAQEFQKRQ DDDLHALMVL VQQIVSFHMK HNAEPEAVDL
201: LMEVEDLDLL VEHVDATNYK RACLYLTSSS KFLPAPDDSL ALDIAYTIYM KFGDLASALR ISLQLEKSVQ YVKQVYTATD DLLLKKQFSY LIARHGLAME
301: IDDEISTDDN DKEALQEIVN NTKLSEGYLT LARDIEVMEP KSPEDIYKVH LIDGRGASSS LDSARQNLAA TFVNAFVNAG FGKDKLMTAP SDSPSSGSSG
401: NWLFKNKEHG KASAAASLGM ILLWDTDSGL AQLDKYLHSN DTHVVAGALL GIGIVTCGVK SDCDPAFAIL MEYIGKDDSN IRIGAILGLG IAYAGSQKEE
501: LKMHLSAVLG DSQSPLEVLV FSAIALGLVF VGSCNEEIAQ SIIFALMERS EAELAEPIIR LLPVALGLLY LGKQDSVEAT AEVSKTFDEK IGKYCDVTLM
601: SLAYAGTGNV LKVQKLLGIC SQHLEKGETH QGPAVLGIAL IAMAEELGAE MAVRSLERLL QYGEQNIRRA VPLALGILCI SNPKVNVMDT LSRLSHDADA
701: DVSMAAIISL GLIGAGTNNA RIAAMLRNLS SYYYKEAAHL FCVRIAQGLV HLGKGLLTLS PYHSDRFLLS PMALGGLVTV LHACLDMKST ILGKYHYILY
801: IIVLAMQPRM LLTVDEDLKP LSVPVRVGQA VDVVGQAGRP KTITGFQTHS TPVLLAAGER AELATEKYIP LTPVLEGFVI LKKNPEYHEE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.