Factsheet for Zm00001d024342_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049357_P001	Maize	plasma membrane	94.35	94.64
EES13543	Sorghum	endoplasmic reticulum	90.92	91.19
Os08t0224700-01	Rice	plasma membrane	82.24	82.57
Zm00001d026265_P002	Maize	plasma membrane	82.24	79.75
Zm00001d002373_P006	Maize	cytosol, plasma membrane	79.01	77.68
VIT_00s0215g00040.t01	Wine grape	extracellular	48.23	74.69
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	75.58	74.53
GSMUA_Achr1P10550_001	Banana	cytosol	75.28	73.79
AT2G32730.1	Thale cress	cytosol	74.37	73.41
CDY12178	Canola	cytosol	73.46	73.39
CDY19162	Canola	extracellular	73.97	73.01
Bra021810.1-P	Field mustard	cytosol, plastid	73.86	72.91
CDX79472	Canola	cytosol, plastid	73.46	72.87
Bra022899.1-P	Field mustard	cytosol, plastid	73.76	72.81
CDX84724	Canola	cytosol, plastid	73.66	72.64
CDY23791	Canola	cytosol, plastid	73.86	72.62
KRH41754	Soybean	nucleus	73.56	72.47
VIT_00s0125g00350.t01	Wine grape	cytosol	13.52	72.43
KRH60454	Soybean	endoplasmic reticulum	73.46	72.37
AT1G04810.1	Thale cress	cytosol	73.06	72.33
PGSC0003DMT400040763	Potato	cytosol	72.45	72.31
Bra005560.1-P	Field mustard	plastid	73.26	72.02
Solyc09g091750.2.1	Tomato	plastid	72.96	72.01
PGSC0003DMT400076219	Potato	endoplasmic reticulum	72.96	72.01
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	72.05	71.9
CDY60623	Canola	endoplasmic reticulum, golgi	69.42	71.0
VIT_00s0215g00050.t01	Wine grape	cytosol	19.07	63.0
Zm00001d053881_P001	Maize	mitochondrion, plastid	15.14	16.82
Zm00001d015259_P001	Maize	cytosol	15.04	16.74

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	UniProt:A0A1D6IYV8	ProteinID:AQK41055.1	InterPro:ARM-like
InterPro:ARM-type_fold	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0019538
GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR011989	PFAM:PF01851	PFAM:PF13646
PIRSF:PIRSF015947	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	UniParc:UPI0008444DC1
EnsemblPlantsGene:Zm00001d024342	EnsemblPlants:Zm00001d024342_P001	EnsemblPlants:Zm00001d024342_T001	SEG:seg	:	:

Description

26S proteasome non-ATPase regulatory subunit 1 homolog B

Coordinates

chr10:+:65777201..65792002

Molecular Weight (calculated)

107065.0 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.084

Length

991 amino acids

Sequence
(BLAST)

001: MASAAVMVSS AGSLLAMLQE PAPELKLHAL ASLNSLVHAF WHEISTSVSS IESLYEDEEF VQRQLAALVA SKVFFYLGEL NDALSYALGA GPLFDVSDDS
101: DYAQTLLAKA LDEYTAIQSR GTGEEKTIDP RLEAIVERML DKCILDGKYQ QAMGMSVECR RLDKLEAAIS RCDNLHGVLS YCINLSHQYV SHREYRLEIL
201: QCLVKIYQTL PNPDYLSICQ CLMFLGEPES VANMLDKLIS GSKDDALLAY QTAFDLAENE NQAFLLNVRN HLDALSSHTS AHVDLDSGPT VPSNQTNAAT
301: ELSGDVQMRD DINMPNGSAT TVDSNAATHA DRLTKIKGIL SGETSIQLTL QFLYSHNRSD LQILKTIKQA VEMRNSVCHS AAICSNAIMH AGTTVDTFLR
401: ENLEWLGRAT NWAKFSATAG LGVIHRGHLQ QGRALMAPYL PQNGAGGSGS PYSEGGALYA LGLIHANHGE GIKEFLRESL RNTTSEVVQH GACLGLGLAA
501: LGTSDEEICE DIKNILYTDS AVAGEAAGIG MGLLMVGTAS EKATEMLAYA HDTQHEKIIR GLSLGIALTV YGREEEADTL IEQMTRDQDP ILRYGGMYAL
601: ALAYRGTANN KAIHQLLHFA VSDVSDDVRR TAVLALGFVL YNEPEQTPRI VSLLSESYNP HVRYGAALAV GISCAGTGLS EAISLLEPLT SDVVDFVRQG
701: ALIAMAMVMI QTNESYDPRV GAFRRQLEKI ILDKHEDAMS KMGAILASGI LDAGGRNVTI KLKSRSKHDR LTAVVGLAVF TQFWYWYPLT YFISLAFSPT
801: ALIGLNSDLK VPKFEFLSNA KPSLFDYPKP VTQQTTATSV KVPAAILSTY AKSKSRARKD AESKAKAKAE DSSSASTSMQ VDGASAAGAA AEKAPEPEPT
901: FQILTNPARV VPAQEKFIKF LEDSRYKPVK AAPSGFVLLQ DLEPTEAEEL ALTDAPSTAA TTSTPASSAG EPVGMAVDDE PQPPPAFEYT S

Best Arabidopsis Sequence Match ( AT1G04810.1 )
(BLAST)

0001: MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS
0101: DYIHTLLSKA IDEYAILRSK AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT LSYCINVSHS FVNQREYRHE
0201: VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA
0301: GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS VEVIQHGACL GLGLAALGTA
0501: DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGAFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP
0901: EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS
1001: P

Arabidopsis Description

RPN2B26S proteasome non-ATPase regulatory subunit 1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.