CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022899.1-P	Field mustard	cytosol, plastid	99.3	98.8
CDX84724	Canola	cytosol, plastid	99.2	98.61
CDY19162	Canola	extracellular	96.2	95.72
CDY23791	Canola	cytosol, plastid	96.1	95.24
AT2G32730.1	Thale cress	cytosol	95.4	94.92
CDY12178	Canola	cytosol	93.69	94.35
CDY60623	Canola	endoplasmic reticulum, golgi	89.79	92.57
KRH41754	Soybean	nucleus	83.78	83.2
KRH60454	Soybean	endoplasmic reticulum	83.18	82.6
PGSC0003DMT400040763	Potato	cytosol	80.38	80.87
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	79.98	80.46
Solyc09g091750.2.1	Tomato	plastid	80.38	79.98
PGSC0003DMT400076219	Potato	endoplasmic reticulum	80.38	79.98
GSMUA_Achr1P10550_001	Banana	cytosol	79.48	78.54
KXG27072	Sorghum	plasma membrane	76.88	76.19
Zm00001d026265_P002	Maize	plasma membrane	76.68	74.95
Os04t0608500-01	Rice	plasma membrane	22.92	74.35
Zm00001d049357_P001	Maize	plasma membrane	73.37	74.19
Os08t0224700-01	Rice	plasma membrane	73.17	74.06
Zm00001d024342_P001	Maize	plasma membrane	72.87	73.46
EES13543	Sorghum	endoplasmic reticulum	72.57	73.38
Zm00001d002373_P006	Maize	cytosol, plasma membrane	73.57	72.92
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	69.57	72.7
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	68.47	72.69
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	74.77	72.45
VIT_00s0125g00350.t01	Wine grape	cytosol	13.41	72.43
TraesCS2A01G430100.2	Wheat	golgi	75.38	72.4
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	74.57	72.33
TraesCS1B01G363000.1	Wheat	cytosol	71.37	71.16
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	70.97	70.76
CDY33145	Canola	extracellular	0.4	17.39
CDY05774	Canola	cytosol	14.71	16.41
CDY38389	Canola	cytosol, extracellular	14.41	16.14
CDX92875	Canola	extracellular	14.31	16.05
CDY29907	Canola	extracellular	14.31	16.05
CDY35187	Canola	cytosol, extracellular	14.31	16.03
CDY31952	Canola	plasma membrane	13.71	16.0
CDY14239	Canola	cytosol, extracellular	14.01	15.77
CDX97442	Canola	cytosol	13.01	14.72
CDY65736	Canola	extracellular	3.9	9.61
CDY33144	Canola	extracellular	3.0	9.58
CDX99107	Canola	cytosol	2.4	9.27
CDY72396	Canola	cytosol	0.7	4.86

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	GO:A0A078CRU4	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX79472	ProteinID:CDX79472	ProteinID:CDX79472.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	EnsemblPlantsGene:GSBRNA2T00132213001	InterPro:IPR011989	PFAM:PF13646
PIRSF:PIRSF015947	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	SUPFAM:SSF48371	TMHMM:TMhelix	UniParc:UPI0004EBADA0
SEG:seg	:	:	:	:	:

Description

BnaC03g18080D

Coordinates

chrLK031818:+:252335..257295

Molecular Weight (calculated)

108412.0 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.077

Length

999 amino acids

Sequence
(BLAST)

001: MAAAMVSSAG GLLAMLNEPQ PSLKHHALSH LNNLVDRFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPSFDVSEDT
101: DYVHTLLAKA IDEYASLRSK AFESNEMVDI DSRLEAIVER MLEKCITDKK YQQAMGIAIE CRRLDKLEEA ITKSDNVEGT LSYCINVSHS FVNRREYRHE
201: VLTLLVKVFQ QLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSESKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RPVEAVQAVE TTTAPTENPS
301: GDVPMADGTP APTIVHETDP VDATYAERLA KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKE FLRDSLRSTN VEVIQHGACL GLGLSAIGTA
501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
701: MAMVMVQISE ASDSRVGTFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSVKAK ARAKKEAEQK ANAEKTSGAE KSVNESGSGK EKEGDAMQVD SSATAEKKAA
901: EPEPAFEILV NPARVVPAQE KYIKLLEDSR YVPVKLSPSG FVLLKDLREH EPEVLSLTDA PTSTASPATG AAAATQGTTA SAMAVDDEPQ PPQAFEYAS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.