CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021810.1-P	Field mustard	cytosol, plastid	99.9	99.9
CDY23791	Canola	cytosol, plastid	99.3	98.91
CDX79472	Canola	cytosol, plastid	95.72	96.2
CDX84724	Canola	cytosol, plastid	95.72	95.62
AT2G32730.1	Thale cress	cytosol	94.72	94.72
CDY12178	Canola	cytosol	93.53	94.66
CDY60623	Canola	endoplasmic reticulum, golgi	89.74	92.98
KRH41754	Soybean	nucleus	83.37	83.2
KRH60454	Soybean	endoplasmic reticulum	82.87	82.7
PGSC0003DMT400040763	Potato	cytosol	80.18	81.07
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	79.78	80.66
PGSC0003DMT400076219	Potato	endoplasmic reticulum	80.38	80.38
Solyc09g091750.2.1	Tomato	plastid	80.28	80.28
GSMUA_Achr1P10550_001	Banana	cytosol	78.98	78.44
KXG27072	Sorghum	plasma membrane	76.69	76.39
Zm00001d026265_P002	Maize	plasma membrane	76.49	75.15
Zm00001d049357_P001	Maize	plasma membrane	73.51	74.7
Os04t0608500-01	Rice	plasma membrane	22.91	74.68
Os08t0224700-01	Rice	plasma membrane	73.21	74.47
Zm00001d024342_P001	Maize	plasma membrane	73.01	73.97
EES13543	Sorghum	endoplasmic reticulum	72.61	73.79
Zm00001d002373_P006	Maize	cytosol, plasma membrane	73.61	73.31
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	69.02	72.49
VIT_00s0125g00350.t01	Wine grape	cytosol	13.35	72.43
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	67.73	72.26
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	74.1	72.16
TraesCS2A01G430100.2	Wheat	golgi	74.7	72.12
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	73.71	71.84
TraesCS1B01G363000.1	Wheat	cytosol	70.72	70.86
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	70.52	70.66
CDY33145	Canola	extracellular	0.4	17.39
CDY05774	Canola	cytosol	14.74	16.52
CDY38389	Canola	cytosol, extracellular	14.44	16.26
CDX92875	Canola	extracellular	14.34	16.16
CDY29907	Canola	extracellular	14.34	16.16
CDY35187	Canola	cytosol, extracellular	14.34	16.14
CDY31952	Canola	plasma membrane	13.74	16.12
CDY14239	Canola	cytosol, extracellular	14.14	15.99
CDX97442	Canola	cytosol	13.15	14.95
CDY65736	Canola	extracellular	3.88	9.61
CDY33144	Canola	extracellular	2.99	9.58
CDX99107	Canola	cytosol	2.39	9.27
CDY72396	Canola	cytosol	0.7	4.86

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	GO:A0A078G2C8	UniProt:A0A078G2C8	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY19162	ProteinID:CDY19162	ProteinID:CDY19162.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030234
GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00006450001	InterPro:IPR011989	PFAM:PF01851	PFAM:PF13646
PIRSF:PIRSF015947	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	TMHMM:TMhelix
UniParc:UPI0004EE79F6	SEG:seg	:	:	:	:

Description

BnaA04g19020DBnaA04g19020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2C8]

Coordinates

chrLK032092:+:636055..640978

Molecular Weight (calculated)

108987.0 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.069

Length

1004 amino acids

Sequence
(BLAST)

0001: MAAVMVSSAG GLLAMLNEPQ PSLKHHALSH LNNLVDRFWP EISTSVPIIE SLYEDEEFDM HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPQFDVSEDT
0101: DYVHTLLAKA IDEYASLRSK AVESNDMVDI DPRLEAIVER MLEKCITDGK YQQAMGIAIE CRRLDKLEEA IVKSDNVQGT LAYCINVSHS FVNRREYRHE
0201: VLTLLVKVYQ QLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSESKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RIVETVQTVE ITDAPAENPS
0301: GDVQMADGAP APTPTPAPAP TIVHETDPVD ATYAERLTKI KGILSGETSI QLTLQFLYSH NKSDLLILKT IKQSVEMRNS VCHSATIYAN AIMHAGTTVD
0401: TFLRENLDWL SRATNWAKFS ATAGLGVIHR GHLQQGRSLM APYLPQGGAG GGGSPYSEGG ALYALGLIHA NHGEGIKQFL RDSLRSTNVE VIQHGACLGL
0501: GLSALGTADE EIYDDVKSVL YTDSAVAGEA AGISMGLLLV GTATEKASEM LAYAHETQHE KIIRGLALGI ALTVYGREEG ADTLIEQMTR DQDPIIRYGG
0601: MYALALAYSG TANNKAIRQL LHFAVSDVSD DVRRTAVLAL GFVLYSDPEQ TPRIVSLLSE SYNPHVRYGA ALAVGISCAG TGLSEAISLL EPLTSDVVDF
0701: VRQGALIAMA MVMVQISEAS DSRVGKFRRQ LEKIILDKHE DTMSKMGAIL ASGILDAGGR NVTIRLLSKT KHDKVTAVIG LAVFSQFWYW YPLIYFISLA
0801: FSPTAFIGLN YDLKVPKFEF MSHAKPSLFE YPKPTTVPTA NTAAKLPTAV LSTSVKAKAR AKKDAEQKAN AEKASGAEKP VSESGSGKDK EGDSMQVDST
0901: ATVEKKAAEP EAAFEILVNP ARVVPAQEKY IKLLEDSRYV PVKLAPSGFV LLKDLREHEP EVLSLTDAPT STASPAAAAT QGTTASAMAV DDEPQPPQAF
1001: EYAT

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.