Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
28052459
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010366.1-P | Field mustard | cytosol | 98.42 | 98.65 |
| CDX97442 | Canola | cytosol | 90.54 | 91.05 |
| CDY29907 | Canola | extracellular | 84.23 | 83.95 |
| CDX92875 | Canola | extracellular | 84.01 | 83.73 |
| CDY38389 | Canola | cytosol, extracellular | 84.01 | 83.63 |
| CDY35187 | Canola | cytosol, extracellular | 84.01 | 83.63 |
| AT4G28470.1 | Thale cress | cytosol | 82.43 | 82.15 |
| CDY05774 | Canola | cytosol | 80.97 | 80.25 |
| CDY31952 | Canola | plasma membrane | 75.79 | 78.62 |
| Solyc07g053650.2.1 | Tomato | nucleus | 69.71 | 75.3 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 75.11 | 74.94 |
| PGSC0003DMT400024306 | Potato | cytosol | 74.32 | 73.66 |
| GSMUA_Achr11P... | Banana | cytosol | 68.24 | 68.24 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 68.13 | 67.6 |
| TraesCS6D01G105500.1 | Wheat | golgi | 68.13 | 67.6 |
| Os02t0146700-02 | Rice | plasma membrane | 68.24 | 67.48 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 68.13 | 67.37 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 67.12 | 66.82 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 68.02 | 66.81 |
| Zm00001d015259_P001 | Maize | cytosol | 66.78 | 66.63 |
| EES04513 | Sorghum | cytosol | 67.0 | 66.55 |
| Os06t0699900-01 | Rice | plasma membrane | 66.89 | 65.93 |
| Os09t0326800-01 | Rice | plasma membrane | 66.1 | 65.88 |
| Solyc10g008180.1.1 | Tomato | plastid | 53.72 | 65.25 |
| CDY72396 | Canola | cytosol | 10.02 | 61.81 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 19.71 | 59.93 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 53.15 | 57.77 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 57.21 | 57.73 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 56.19 | 57.55 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 53.83 | 57.52 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 56.42 | 56.93 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 36.04 | 51.61 |
| CDX99107 | Canola | cytosol | 13.63 | 46.72 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 28.83 | 43.69 |
| CDY33144 | Canola | extracellular | 14.08 | 39.94 |
| CDY65736 | Canola | extracellular | 14.98 | 32.76 |
| CDY33145 | Canola | extracellular | 0.68 | 26.09 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.7 | 16.55 |
| CDY12178 | Canola | cytosol | 16.22 | 14.52 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 15.77 | 14.45 |
| CDY19162 | Canola | extracellular | 15.99 | 14.14 |
| CDY23791 | Canola | cytosol, plastid | 15.99 | 14.09 |
| CDX84724 | Canola | cytosol, plastid | 15.88 | 14.03 |
| CDX79472 | Canola | cytosol, plastid | 15.77 | 14.01 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | GO:A0A078FMY0 | UniProt:A0A078FMY0 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY14239 | ProteinID:CDY14239 | ProteinID:CDY14239.1 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008540 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0042176 |
| GO:GO:0050790 | EnsemblPlantsGene:GSBRNA2T00078816001 | InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 |
| PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI0004EF083D | SEG:seg | : |
Description
BnaA08g13700DBnaA08g13700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMY0]
Coordinates
chrLK032041:+:417112..422175
Molecular Weight (calculated)
97176.6 Da
IEP (calculated)
5.483
GRAVY (calculated)
-0.076
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAPDPNSS VGGGGGAKRD QASTKVKAPK KKEEDLSEED LELKQNLELY VKRVQDPNPE LQKTALESMS QEIRASTSSM TSVPMPLKFL RPHYGTLKDC
101: HQKMAESDLK KLLADILSVL ALTMSAEGER ESLGYRLAGS GGDIGSWGHE YVRNLAGEVA VEYTIRQVQE SSIMDLMDLV RQIVAFHMKH NAETEAVDLL
201: MEVEDLDPLL DHVGRTNFRR TCNYLTSAAK YRPWPDDMVA LDIAYMIYMK FKAYPNALQI ALLLDNMQYV KKVFTSCTNL LRKKQFCYMI SRHGITFNLD
301: PEMVEDKDDR SMLQEIVNNT KLNEGYLTLA RDIDVMEAKR PEDIYKAHLL NVRSGPVVES AKQNLAATFV NAFVNAGFGQ DKLVAGTSDS TSGSAGNWIF
401: RNKDDGKTSA TASLGMIYLW DVEGGLAQLD KYYDSALSDK PVGAGALLGV GIVNCGIKSD FDPALALIGD YINNEDSSVR VGAIMGIGIA YAGSQNDQIK
501: SSLSPILNDK KAPLDVVAFA ALSLGMVYVG SCNDEVAQSI MFALMDRNSA EPGEALVRFL PLGLGLLYLG KQESVEATAE ISKTLCEKIR NYCKMTLLSC
601: AYAGTGNVLK VQELLAQCGE HPEKDTIHQG PAVLGVAMIA MSEELGRDMA IRSLEHVLQY GEQNIRRAVP LALGLLCISN PKMNVMDTLS RLSHDTDSEV
701: AMTATISLGL IGAGTNNARI AGMLRNLSSY NEQHARLLFC VRIAQGLLHM GKGLLTLNPF HSDRVLLSPT ALAGIVTLLH ACLDMKSIIL GKYHYVLYFL
801: ALAMQPRMML TVDENLKPIS VPVRVGQAVD VVGQAGRPRT ITGFQTYETP VLLAAGERAE LATDKYIPLS PILEGFVILG ENPNYREE
101: HQKMAESDLK KLLADILSVL ALTMSAEGER ESLGYRLAGS GGDIGSWGHE YVRNLAGEVA VEYTIRQVQE SSIMDLMDLV RQIVAFHMKH NAETEAVDLL
201: MEVEDLDPLL DHVGRTNFRR TCNYLTSAAK YRPWPDDMVA LDIAYMIYMK FKAYPNALQI ALLLDNMQYV KKVFTSCTNL LRKKQFCYMI SRHGITFNLD
301: PEMVEDKDDR SMLQEIVNNT KLNEGYLTLA RDIDVMEAKR PEDIYKAHLL NVRSGPVVES AKQNLAATFV NAFVNAGFGQ DKLVAGTSDS TSGSAGNWIF
401: RNKDDGKTSA TASLGMIYLW DVEGGLAQLD KYYDSALSDK PVGAGALLGV GIVNCGIKSD FDPALALIGD YINNEDSSVR VGAIMGIGIA YAGSQNDQIK
501: SSLSPILNDK KAPLDVVAFA ALSLGMVYVG SCNDEVAQSI MFALMDRNSA EPGEALVRFL PLGLGLLYLG KQESVEATAE ISKTLCEKIR NYCKMTLLSC
601: AYAGTGNVLK VQELLAQCGE HPEKDTIHQG PAVLGVAMIA MSEELGRDMA IRSLEHVLQY GEQNIRRAVP LALGLLCISN PKMNVMDTLS RLSHDTDSEV
701: AMTATISLGL IGAGTNNARI AGMLRNLSSY NEQHARLLFC VRIAQGLLHM GKGLLTLNPF HSDRVLLSPT ALAGIVTLLH ACLDMKSIIL GKYHYVLYFL
801: ALAMQPRMML TVDENLKPIS VPVRVGQAVD VVGQAGRPRT ITGFQTYETP VLLAAGERAE LATDKYIPLS PILEGFVILG ENPNYREE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.