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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67842
CDX70711
CDX70903
CDX71344
CDX71518
CDX71775
CDX73215
CDX74142
CDX74635
CDX74842
CDX78706
CDX79472
CDX80372
CDX83563
CDX84724
CDX87167
CDX87648
CDX88035
CDX88666
CDX88865
CDX89080
CDX90170
CDX92875
CDX93103
CDX94649
CDX95156
CDX95297
CDX97442
CDX99654
CDX99790
CDY02422
CDY02493
CDY02494
CDY02806
CDY04139
CDY04184
CDY04377
CDY05176
CDY05774
CDY06213
CDY07280
CDY08208
CDY10294
CDY10662
CDY12178
CDY13593
CDY14239
CDY14507
CDY15648
CDY16857
CDY17426
CDY18045
CDY18782
CDY18801
CDY19162
CDY19309
CDY20470
CDY21248
CDY21807
CDY23791
CDY24076
CDY24500
CDY25683
CDY25685
CDY27761
CDY29907
CDY30665
CDY31596
CDY31952
CDY32714
CDY32995
CDY33398
CDY33613
CDY34241
CDY34315
CDY35187
CDY35832
CDY36602
CDY36905
CDY37382
CDY38389
CDY39004
CDY39183
CDY39438
CDY39501
CDY40714
CDY40791
CDY41710
CDY42324
CDY42368
CDY43320
CDY43865
CDY44958
CDY46961
CDY47297
CDY47840
CDY50408
CDY50790
CDY51800
CDY52345
CDY52371
CDY54257
CDY54330
CDY54948
CDY55064
CDY55258
CDY56729
CDY58566
CDY59032
CDY59856
CDY60623
CDY62022
CDY66240
CDY68129
CDY68783
CDY69078
CDY69533
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29040.1 CDY54330 AT1G20200.1 14623884
AT4G29040.1 CDX90170 AT1G29150.1 14623884
AT4G29040.1 CDX94649 AT1G29150.1 14623884
AT4G29040.1 CDX99790 AT1G29150.1 14623884
AT4G29040.1 CDY15648 AT1G29150.1 14623884
AT4G29040.1 CDY43320 AT1G29150.1 14623884
AT4G29040.1 CDY50790 AT1G29150.1 14623884
AT4G29040.1 CDX74842 AT1G53750.1 14623884
AT4G29040.1 CDY02494 AT1G53750.1 14623884
AT4G29040.1 CDY20470 AT1G53750.1 14623884
AT4G29040.1 CDY24076 AT1G53750.1 14623884
AT4G29040.1 CDY25685 AT1G53750.1 14623884
AT4G29040.1 CDY30665 AT1G53750.1 14623884
AT4G29040.1 CDY36602 AT1G53750.1 14623884
AT4G29040.1 CDY02493 AT1G53850.1 14623884
AT4G29040.1 CDY08208 AT1G53850.1 14623884
AT4G29040.1 CDY25683 AT1G53850.1 14623884
AT4G29040.1 CDY51800 AT1G53850.1 14623884
AT4G29040.1 CDY04377 AT1G56450.1 14623884
AT4G29040.1 CDY39004 AT1G56450.1 14623884
AT4G29040.1 CDY41710 AT1G56450.1 14623884
AT4G29040.1 CDY42368 AT1G56450.1 14623884
AT4G29040.1 CDY54948 AT1G56450.1 14623884
AT4G29040.1 CDY68783 AT1G56450.1 14623884
AT4G29040.1 CDY24500 AT1G59900.1 24846764
AT4G29040.1 CDY31596 AT1G59900.1 24846764
AT4G29040.1 CDY33613 AT1G59900.1 24846764
AT4G29040.1 CDY55064 AT1G59900.1 24846764
AT4G29040.1 CDY47840 AT1G64520.1 14623884
AT4G29040.1 CDY62022 AT1G64520.1 14623884
AT4G29040.1 CDY69533 AT1G64520.1 14623884
AT4G29040.1 CDX73215 AT1G75990.1 14623884
AT4G29040.1 CDX87648 AT1G75990.1 14623884
AT4G29040.1 CDX93103 AT2G05840.1 14623884
AT4G29040.1 CDY18045 AT2G05840.1 14623884
AT4G29040.1 CDY33398 AT2G05840.1 14623884
AT4G29040.1 CDY50408 AT2G05840.1 14623884
AT4G29040.1 CDY05774 AT2G20580.1 14623884
AT4G29040.1 CDY31952 AT2G20580.1 14623884
AT4G29040.1 CDX79472 AT2G32730.1 14623884
AT4G29040.1 CDX84724 AT2G32730.1 14623884
AT4G29040.1 CDY12178 AT2G32730.1 14623884
AT4G29040.1 CDY19162 AT2G32730.1 14623884
AT4G29040.1 CDY23791 AT2G32730.1 14623884
AT4G29040.1 CDY60623 AT2G32730.1 14623884
AT4G29040.1 CDX74142 AT3G05530.1 14623884
AT4G29040.1 CDY05176 AT3G05530.1 14623884
AT4G29040.1 CDY18782 AT3G05530.1 14623884
AT4G29040.1 CDY18801 AT3G05530.1 14623884
AT4G29040.1 CDY27761 AT3G05530.1 14623884
AT4G29040.1 CDY40714 AT3G05530.1 14623884
AT4G29040.1 CDY19309 AT3G22110.1 14623884
AT4G29040.1 CDY37382 AT3G22110.1 14623884
AT4G29040.1 CDY39501 AT3G22110.1 14623884
AT4G29040.1 CDY66240 AT3G22110.1 14623884
AT4G29040.1 CDY10294 AT3G22630.1 14623884
AT4G29040.1 CDY10662 AT3G22630.1 14623884
AT4G29040.1 CDY34241 AT3G22630.1 14623884
AT4G29040.1 CDY55258 AT3G22630.1 14623884
AT4G29040.1 CDX83563 AT3G25860.1 24846764
AT4G29040.1 CDY04184 AT3G25860.1 24846764
AT4G29040.1 CDY13593 AT3G25860.1 24846764
AT4G29040.1 CDY39183 AT3G25860.1 24846764
AT4G29040.1 CDY21807 AT3G48100.1 18642946
AT4G29040.1 CDY36905 AT3G48100.1 18642946
AT4G29040.1 CDY54257 AT3G48100.1 18642946
AT4G29040.1 CDY59856 AT3G48100.1 18642946
AT4G29040.1 CDY68129 AT3G48100.1 18642946
AT4G29040.1 CDY70164 AT3G48100.1 18642946
AT4G29040.1 CDX67842 AT3G60820.1 14623884
AT4G29040.1 CDX71344 AT3G60820.1 14623884
AT4G29040.1 CDX71775 AT3G60820.1 14623884
AT4G29040.1 CDX89080 AT3G60820.1 14623884
AT4G29040.1 CDX95297 AT3G60820.1 14623884
AT4G29040.1 CDY07280 AT3G60820.1 14623884
AT4G29040.1 CDY52345 AT3G60820.1 14623884
AT4G29040.1 CDY56729 AT3G60820.1 14623884
AT4G29040.1 CDY34315 AT4G24820.1 14623884
AT4G29040.1 CDX92875 AT4G28470.1 14623884
AT4G29040.1 CDX97442 AT4G28470.1 14623884
AT4G29040.1 CDY14239 AT4G28470.1 14623884
AT4G29040.1 CDY29907 AT4G28470.1 14623884
AT4G29040.1 CDY35187 AT4G28470.1 14623884
AT4G29040.1 CDY38389 AT4G28470.1 14623884
AT4G29040.1 CDX70711 AT5G05780.1 14623884
AT4G29040.1 CDX78706 AT5G05780.1 14623884
AT4G29040.1 CDY04139 AT5G05780.1 14623884
AT4G29040.1 CDY06213 AT5G05780.1 14623884
AT4G29040.1 CDY17426 AT5G05780.1 14623884
AT4G29040.1 CDX70903 AT5G19990.1 14623884
AT4G29040.1 CDX88865 AT5G19990.1 14623884
AT4G29040.1 CDY35832 AT5G19990.1 14623884
AT4G29040.1 CDY42324 AT5G19990.1 14623884
AT4G29040.1 CDY44958 AT5G19990.1 14623884
AT4G29040.1 CDX70903 AT5G20000.1 14623884
AT4G29040.1 CDX88865 AT5G20000.1 14623884
AT4G29040.1 CDY35832 AT5G20000.1 14623884
AT4G29040.1 CDY42324 AT5G20000.1 14623884
AT4G29040.1 CDY44958 AT5G20000.1 14623884
AT4G29040.1 CDX80372 AT5G23540.1 14623884
AT4G29040.1 CDX87167 AT5G23540.1 14623884
AT4G29040.1 CDX88035 AT5G23540.1 14623884
AT4G29040.1 CDY16857 AT5G23540.1 14623884
AT4G29040.1 CDY40791 AT5G23540.1 14623884
AT4G29040.1 CDY46961 AT5G23540.1 14623884
AT4G29040.1 CDY59032 AT5G23540.1 14623884
AT4G29040.1 CDX74635 AT5G35750.1 18642946
AT4G29040.1 CDY47297 AT5G35750.1 18642946
AT4G29040.1 CDX71518 AT5G42790.1 14623884
AT4G29040.1 CDX95156 AT5G42790.1 14623884
AT4G29040.1 CDY02422 AT5G42790.1 14623884
AT4G29040.1 CDY21248 AT5G42790.1 14623884
AT4G29040.1 CDY52371 AT5G42790.1 14623884
AT4G29040.1 CDX99654 AT5G45620.1 14623884
AT4G29040.1 CDY39438 AT5G45620.1 14623884
AT4G29040.1 CDY69078 AT5G45620.1 14623884
AT4G29040.1 CDX88666 AT5G58290.1 14623884
AT4G29040.1 CDY02806 AT5G58290.1 14623884
AT4G29040.1 CDY32714 AT5G58290.1 14623884
AT4G29040.1 CDY32995 AT5G58290.1 14623884
AT4G29040.1 CDY43865 AT5G58290.1 14623884
AT4G29040.1 CDY58566 AT5G58290.1 14623884
AT4G29040.1 CDY14507 AT5G64760.1 14623884
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35245 Canola cytosol 99.77 99.77
AT4G29040.1 Thale cress cytosol 98.65 98.65
CDX92914 Canola cytosol, extracellular 98.65 98.65
CDY14224 Canola cytosol 98.87 98.43
CDX97472 Canola cytosol 98.87 98.43
AT2G20140.1 Thale cress cytosol 98.19 98.19
KRH32292 Soybean cytosol, nucleus 95.71 95.71
KRH19693 Soybean cytosol 95.49 95.49
KRH67524 Soybean nucleus 95.71 95.07
KRG95799 Soybean cytosol, nucleus 95.49 94.84
VIT_07s0005g05160.t01 Wine grape cytosol 95.26 94.83
PGSC0003DMT400040872 Potato cytosol 94.58 94.37
Solyc06g083620.2.1 Tomato nucleus, plastid 93.91 93.69
PGSC0003DMT400051744 Potato cytosol 93.91 93.69
GSMUA_Achr4P05850_001 Banana cytosol 88.49 92.45
GSMUA_Achr4P05840_001 Banana cytosol 87.36 91.92
EER99961 Sorghum cytosol 91.87 91.05
TraesCS2D01G087900.1 Wheat cytosol, golgi 92.1 90.87
TraesCS2B01G105700.1 Wheat cytosol 92.1 90.87
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 91.87 90.85
Zm00001d022573_P001 Maize cytosol, extracellular, plasma membrane 91.65 90.83
TraesCS2A01G090000.1 Wheat cytosol 91.87 90.65
Os03t0298400-01 Rice plasma membrane 91.87 90.44
HORVU4Hr1G055060.1 Barley cytosol 91.42 90.0
TraesCS4D01G190600.1 Wheat cytosol, golgi 91.42 90.0
Zm00001d028801_P001 Maize cytosol, extracellular 90.52 89.91
TraesCS4B01G189200.1 Wheat cytosol 91.2 89.78
TraesCS4A01G115000.1 Wheat cytosol 91.2 89.78
Zm00001d007215_P001 Maize cytosol 91.65 87.5
HORVU2Hr1G014770.2 Barley cytosol, plastid 86.23 86.62
CDY59958 Canola cytosol 64.56 78.57
HORVU3Hr1G095530.3 Barley mitochondrion, plastid 41.76 73.71
HORVU1Hr1G091080.1 Barley mitochondrion, plastid 41.53 73.31
CDX88666 Canola cytosol 42.89 47.03
CDY43865 Canola cytosol 42.66 46.78
CDY58566 Canola cytosol 42.66 46.78
CDY02806 Canola cytosol 42.66 46.78
CDY32995 Canola cytosol, extracellular 42.66 46.78
CDY32714 Canola cytosol 42.66 46.78
CDY20370 Canola cytosol 28.22 46.47
CDY39032 Canola cytosol 25.28 44.62
CDY40714 Canola cytosol 40.18 41.98
CDY27761 Canola cytosol 40.18 41.98
CDY05176 Canola cytosol 40.18 41.98
CDY18782 Canola cytosol 40.18 41.98
CDY18801 Canola cytosol 40.18 41.98
CDX74142 Canola cytosol 40.18 41.98
CDY02428 Canola cytosol, extracellular 37.7 41.85
CDY25226 Canola cytosol 37.7 41.85
CDX70903 Canola cytosol 39.28 41.83
CDX71534 Canola cytosol 37.47 41.6
CDY22373 Canola cytosol 37.47 41.6
CDY35832 Canola cytosol 38.83 41.05
CDX74842 Canola cytosol 37.02 39.81
CDY39033 Canola cytosol 35.89 39.16
CDY36602 Canola cytosol 37.47 38.97
CDY02494 Canola cytosol 37.47 38.97
CDY24076 Canola cytosol 37.47 38.97
CDY30665 Canola cytosol 37.47 38.97
CDY25685 Canola cytosol 37.47 38.97
CDY20470 Canola cytosol, plasma membrane 36.79 38.26
CDY08201 Canola cytosol 30.02 37.46
CDY20371 Canola cytosol, plastid 34.99 35.23
CDY30663 Canola cytosol 34.31 35.19
CDY25624 Canola cytosol 18.51 32.67
CDX88865 Canola cytosol, extracellular 38.37 27.03
CDY42324 Canola cytosol, extracellular 39.05 24.13
CDY44958 Canola cytosol, plasma membrane 39.05 23.99
CDY04161 Canola cytosol 25.96 19.07
CDY11249 Canola cytosol 29.12 16.17
CDY54618 Canola cytosol 29.35 16.09
CDY41581 Canola cytosol 29.35 16.09
CDY13308 Canola cytosol 29.35 16.05
CDX89923 Canola cytosol 27.54 15.97
CDY07941 Canola cytosol 29.12 15.95
CDX73996 Canola cytosol 29.12 15.95
CDX80862 Canola cytosol, plastid 29.12 15.95
CDY41316 Canola cytosol, extracellular 29.12 15.93
CDY22207 Canola cytosol 29.12 15.93
CDY33111 Canola endoplasmic reticulum, plasma membrane, vacuole 25.73 15.92
CDX74308 Canola mitochondrion 24.61 15.44
CDY23949 Canola cytosol 25.06 15.31
CDX84794 Canola cytosol 25.51 15.21
CDY45794 Canola nucleus 27.09 15.06
CDX67563 Canola cytosol 28.89 14.56
CDX78154 Canola cytosol 24.15 14.38
CDX91939 Canola cytosol, mitochondrion 25.06 14.29
CDX73571 Canola cytosol 23.7 14.13
CDY32490 Canola mitochondrion 29.12 13.92
CDY37450 Canola mitochondrion 28.67 13.73
CDX89698 Canola endoplasmic reticulum 20.32 12.95
CDX72118 Canola plastid 27.54 12.92
CDY56774 Canola plastid 27.54 11.98
CDY62119 Canola cytosol 26.19 10.62
CDX69950 Canola cytosol 25.73 10.44
CDY02982 Canola cytosol 26.41 9.92
CDY18139 Canola extracellular, vacuole 4.74 6.93
CDY69655 Canola cytosol, nucleus 0.0 0.0
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.2Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300GO:A0A078F118
InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY06847ProteinID:CDY06847ProteinID:CDY06847.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0016787GO:GO:0019538GO:GO:0030163EnsemblPlantsGene:GSBRNA2T00123115001InterPro:P-loop_NTPasePFAM:PF00004
ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF61SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242
UniParc:UPI0004EECA0ESEG:seg::::
Description
BnaC01g09460D
Coordinates
chrLK031973:-:763428..766693
Molecular Weight (calculated)
49397.8 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.468
Length
443 amino acids
Sequence
(BLAST)
001: MGQGPSGGLN RQGDKKPDGG DKKEKKFEPA APPSRVGRKQ RRQKGPEAAA RLPTVTPSTK CKLRLLKMER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAIGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.