CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY57144
CDY65072

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	CDY57144	AT3G56800.1	11346951
AT3G56690.1	CDY65072	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007262.1-P	Field mustard	plastid	91.63	88.27
CDY56774	Canola	plastid	95.13	88.21
AT3G56690.1	Thale cress	cytosol, plastid	84.85	78.38
PGSC0003DMT400018483	Potato	cytosol	28.39	65.37
GSMUA_Achr6P29120_001	Banana	cytosol	36.65	57.67
VIT_08s0040g00910.t01	Wine grape	cytosol	61.76	55.05
Solyc10g078320.1.1	Tomato	nucleus	56.25	53.8
KRH66707	Soybean	plastid	57.52	51.91
KRG95054	Soybean	plastid	39.83	48.77
EES09632	Sorghum	cytosol, plastid	47.46	45.34
Zm00001d049140_P006	Maize	cytosol, plastid	47.35	44.48
TraesCS4A01G204700.1	Wheat	cytosol, plastid	47.14	44.23
TraesCS4D01G105500.2	Wheat	cytosol, plastid	46.93	44.04
TraesCS4B01G108300.1	Wheat	plastid	46.5	43.9
TraesCS1B01G089700.1	Wheat	cytosol, plastid	45.55	43.83
HORVU1Hr1G015310.16	Barley	cytosol, plastid	46.61	43.78
HORVU4Hr1G016200.10	Barley	cytosol, plastid	46.5	43.64
TraesCS1A01G071300.1	Wheat	cytosol, plastid	46.19	43.38
TraesCS1D01G073600.1	Wheat	cytosol, plastid	46.08	43.28
CDY25624	Canola	cytosol	11.44	43.03
CDY20370	Canola	cytosol	10.28	36.06
CDY04161	Canola	cytosol	22.67	35.49
CDY39032	Canola	cytosol	9.43	35.46
CDY11249	Canola	cytosol	28.28	33.46
CDY41581	Canola	cytosol	28.6	33.42
CDY54618	Canola	cytosol	28.6	33.42
CDY13308	Canola	cytosol	28.6	33.33
CDX73996	Canola	cytosol	28.5	33.25
CDY07941	Canola	cytosol	28.5	33.25
CDY41316	Canola	cytosol, extracellular	28.5	33.21
CDY22207	Canola	cytosol	28.5	33.21
CDX80862	Canola	cytosol, plastid	28.28	33.0
CDX78154	Canola	cytosol	24.89	31.59
CDX73571	Canola	cytosol	24.79	31.49
CDX74308	Canola	mitochondrion	23.09	30.88
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	23.31	30.73
CDX67563	Canola	cytosol	28.6	30.72
CDX74842	Canola	cytosol	13.35	30.58
CDX71534	Canola	cytosol	12.71	30.08
CDY22373	Canola	cytosol	12.71	30.08
CDY25226	Canola	cytosol	12.71	30.08
CDY02428	Canola	cytosol, extracellular	12.71	30.08
CDX84794	Canola	cytosol	23.52	29.88
CDY24076	Canola	cytosol	13.45	29.81
CDY25685	Canola	cytosol	13.45	29.81
CDY02494	Canola	cytosol	13.45	29.81
CDY30665	Canola	cytosol	13.45	29.81
CDY36602	Canola	cytosol	13.45	29.81
CDY23949	Canola	cytosol	22.88	29.79
CDY20470	Canola	cytosol, plasma membrane	13.35	29.58
CDX91939	Canola	cytosol, mitochondrion	24.15	29.34
CDY35832	Canola	cytosol	12.82	28.88
CDX70903	Canola	cytosol	12.71	28.85
CDY39033	Canola	cytosol	12.29	28.57
CDY08201	Canola	cytosol	10.7	28.45
CDY45794	Canola	nucleus	23.83	28.23
CDX92914	Canola	cytosol, extracellular	13.03	27.77
CDX97472	Canola	cytosol	13.03	27.64
CDY14224	Canola	cytosol	13.03	27.64
CDY35245	Canola	cytosol	12.92	27.54
CDY06847	Canola	cytosol	12.92	27.54
CDY58566	Canola	cytosol	11.76	27.48
CDY30663	Canola	cytosol	12.5	27.31
CDY02806	Canola	cytosol	11.65	27.23
CDY43865	Canola	cytosol	11.65	27.23
CDX88666	Canola	cytosol	11.65	27.23
CDY32714	Canola	cytosol	11.65	27.23
CDY32995	Canola	cytosol, extracellular	11.65	27.23
CDY40714	Canola	cytosol	12.08	26.89
CDY05176	Canola	cytosol	12.08	26.89
CDY18801	Canola	cytosol	12.08	26.89
CDY18782	Canola	cytosol	12.08	26.89
CDY27761	Canola	cytosol	12.08	26.89
CDX74142	Canola	cytosol	12.08	26.89
CDY20371	Canola	cytosol, plastid	12.5	26.82
CDY59958	Canola	cytosol	9.75	25.27
CDX89923	Canola	cytosol	20.44	25.26
CDX89698	Canola	endoplasmic reticulum	18.22	24.75
CDY37450	Canola	mitochondrion	22.99	23.46
CDY32490	Canola	mitochondrion	22.67	23.09
CDY02982	Canola	cytosol	25.21	20.19
CDX88865	Canola	cytosol, extracellular	12.92	19.4
CDX69950	Canola	cytosol	21.72	18.77
CDY62119	Canola	cytosol	21.61	18.68
CDY18139	Canola	extracellular, vacuole	5.61	17.49
CDY42324	Canola	cytosol, extracellular	12.92	17.02
CDY44958	Canola	cytosol, plasma membrane	12.92	16.92
CDY69655	Canola	cytosol, nucleus	0.32	1.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CAU6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlants:CDX72118	ProteinID:CDX72118	ProteinID:CDX72118.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00155929001	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EED0A3
SEG:seg	:	:	:	:	:

Description

BnaC08g27560D

Coordinates

chrLK031795:+:2521693..2525823

Molecular Weight (calculated)

102670.0 Da

IEP (calculated)

6.815

GRAVY (calculated)

-0.213

Length

944 amino acids

Sequence
(BLAST)

001: MPSKKKQPRT PSRLSNSEPP ASPRTPSSST ASRDTYYINE EDLRRGIVKA SAAFPCLLGK SAIIGRVADV APESIRGSKI WLSETSMVAA SLIPGSTVSV
101: SLACTESHSF PLSSIKAEYG VECESSIPDD EPGNYFVLAT VLPSSKVLKD GVRISVNLRY GLGCPVSGRT VFVYPVGRPS SLSDRFNVNG GAHENGVNDL
201: SLLACKELCL ELTPFKNMLP PEKLALESSH EQNGNGNSTP KTPSNSQKPI SPASSVKVDD SVLSIKQQFP SESLVDLREV LSNESSKKLL QICAASWLYP
301: CTLLYGNFVA VPILTETCVF CVKRSNKKPS DTSNRNHAFV INRETKVYLH HTLALASVQD LQFDDDDGEE NLGCEISKLG GLSKEYAMLR DIVVSSSTKS
401: SLSSLGLRPT KGVLIHGPPG TGKTSLARSF ARDCGVNFFS VNGAEIIRQF VGESEKALEE VFRSASNATP AVVFIDDLDA IAPAREEGGE ELSQRMVATL
501: LNLMDGISRS DGVVVVAATN RPNSIEPALR RPGRLDREIE IGVPSSAQRL DILQTILGGM RHSLSDTQLE QLAVGTHGFV GADLAALCCE AAFVCLRKHL
601: DREKGEHALS VGYEDFEKAK IKIRPSAMRE VILEVPKVNW EDVGGQKEVK NQLMEAVEWP QKHQDAFKRI GTRPPSGILM FGPPGCSKTL MARAVASEAG
701: LNFLAVKGPE LFSKWVGESE KAVRSLFAKA RANAPSIIFF DEIDSLASIR GKENDGVSVS DRVMSQLLVE LDGLHQRVGV TVIAATNRPD KIDSALLRPG
801: RFDRLLYVGP PDEADREAIL KIHLRKIPCS SDICLKELAS VTKGYTGADI SLICREAAIA SLEESLEAEE ISMRHLKAAI SLVEPTDIQS YKALSEKFQR
901: LVHTDPQRDN EEVEQPGNKN QRPSLPLWTP LKSIVMFLRR QIGS

Best Arabidopsis Sequence Match ( AT3G56690.1 )
(BLAST)

0001: MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK SAIIARVADV ASESIRGSKI WLSETSMVAA SLSPGSTVSV
0101: SLASPESRFS RSFPLSSIKA EYGDDSESII ADEPGNYFVL TTVFSSSKVF KDAVRISLNL CYGLGCPVSG RTVFVYPVSG PSLSDQFNGN GRSRYDDVNH
0201: LSLLACKELC LELTPFRNML QAKNAFESSY EQNGNGNSTP KTPANLQKFS SPRPKSPVSP IIEDSVFSCK QRFSSESSID LREVLSNESS KKLLQICASS
0301: WLYPCSLLYG NFVSVPILSE ICIFCVKRAD KRPSDTSNRN HAFMINQETK VYLHHTLDLA SEIQGRTFVQ GLQFDEGENV GCEISKLGGL SKEYAILRDI
0401: IDSSSIKNSL SSLGLRPTKG VLIHGPPGTG KTSLARTFAR HSGVNFFSVN GPEIISQYLG ESEKALDEVF RSASNATPAV VFIDDLDAIA PARKEGGEEL
0501: SQRMVATLLN LMDGISRTDG VVVIAATNRP DSIEPALRRP GRLDREIEIG VPSSTQRSDI LHIILRGMRH SLSNIQVEQL AMATHGFVGA DLSALCCEAA
0601: FVCLRRHLDQ SSSSSNLPLE EAPIAESSSN MSDISSDSSD SASSCITISA TTSGAQRSFS LDETVSLVAD DIQNNGNSCS EQMLRKQGEH TLSVGFEDFE
0701: NAKTKIRPSA MREVILEVPK VNWEDVGGQN EVKNQLMEAV EWPQKHQDAF KRIGTRPPSG ILMFGPPGCS KTLMARAVAS EAKLNFLAVK GPELFSKWVG
0801: ESEKAVRSLF AKARANAPSI IFFDEIDSLA SIRGKENDGV SVSDRVMSQL LVELDGLHQR VGVTVIAATN RPDKIDSALL RPGRFDRLLY VGPPNETDRE
0901: AILKIHLRKI PCSSDICLKE LASITKGYTG ADISLICREA AIAALEESLE MEEISMRHLK AAISQIEPTE ILSYKALSEK FQRLVHTDPQ REEEVTQPGN
1001: KSRSLWTPLR SVAMFLRRHI AS

Arabidopsis Description

CIP111Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.