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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 26746009
msms PMID: 26746009 doi
S Chen, Y Luo, G Ding, F Xu
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74842 Canola cytosol 95.07 98.3
CDY30665 Canola cytosol 96.71 96.71
AT1G53750.1 Thale cress cytosol 96.48 96.48
CDY02494 Canola cytosol 96.48 96.48
CDY24076 Canola cytosol 96.48 96.48
CDY36602 Canola cytosol 96.48 96.48
CDY25685 Canola cytosol 96.24 96.24
Zm00001d018309_P003 Maize cytosol 95.07 95.07
EES07646 Sorghum cytosol 95.07 95.07
EES01223 Sorghum cytosol 95.07 95.07
PGSC0003DMT400023656 Potato cytosol 95.31 94.86
TraesCS7A01G156800.1 Wheat cytosol 94.6 94.6
TraesCS7B01G060900.1 Wheat golgi 94.6 94.6
TraesCS7D01G157200.1 Wheat cytosol 94.6 94.6
Solyc06g063140.2.1 Tomato cytosol, extracellular, nucleus, plastid 94.84 94.17
PGSC0003DMT400012446 Potato cytosol 94.84 94.17
TraesCS6D01G326400.1 Wheat cytosol 93.43 93.43
TraesCSU01G080700.1 Wheat cytosol 93.43 93.43
HORVU6Hr1G083150.1 Barley cytosol 93.43 93.43
TraesCS6B01G376500.1 Wheat golgi 93.43 93.43
HORVU7Hr1G032070.1 Barley cytosol 94.13 90.32
CDY08201 Canola cytosol 75.12 90.14
Zm00001d052078_P003 Maize cytosol 95.07 88.62
VIT_11s0016g00230.t01 Wine grape cytosol 77.23 77.41
KRH06953 Soybean cytosol 48.59 76.67
CDY30663 Canola cytosol 76.53 75.46
CDY20370 Canola cytosol 29.34 46.47
CDX70903 Canola cytosol 44.6 45.67
CDY35832 Canola cytosol 44.37 45.11
CDY39032 Canola cytosol 26.06 44.22
CDX71534 Canola cytosol 39.2 41.85
CDY22373 Canola cytosol 39.2 41.85
CDY25226 Canola cytosol 38.97 41.6
CDY02428 Canola cytosol, extracellular 38.73 41.35
CDY27761 Canola cytosol 38.73 38.92
CDX74142 Canola cytosol 38.73 38.92
CDY18801 Canola cytosol 38.73 38.92
CDY18782 Canola cytosol 38.73 38.92
CDY40714 Canola cytosol 38.73 38.92
CDY05176 Canola cytosol 38.73 38.92
CDY02806 Canola cytosol 36.15 38.12
CDY32995 Canola cytosol, extracellular 36.15 38.12
CDY32714 Canola cytosol 36.15 38.12
CDY43865 Canola cytosol 36.15 38.12
CDY58566 Canola cytosol 36.15 38.12
CDX88666 Canola cytosol 36.15 38.12
CDY06847 Canola cytosol 38.26 36.79
CDY35245 Canola cytosol 38.03 36.57
CDY14224 Canola cytosol 38.03 36.4
CDX97472 Canola cytosol 38.03 36.4
CDX92914 Canola cytosol, extracellular 37.79 36.34
CDY39033 Canola cytosol 34.51 36.21
CDY25624 Canola cytosol 20.66 35.06
CDY20371 Canola cytosol, plastid 33.8 32.73
CDY59958 Canola cytosol 27.7 32.42
CDX88865 Canola cytosol, extracellular 43.9 29.73
CDY42324 Canola cytosol, extracellular 44.84 26.64
CDY44958 Canola cytosol, plasma membrane 44.37 26.21
CDY04161 Canola cytosol 26.53 18.74
CDX74308 Canola mitochondrion 28.64 17.28
CDY11249 Canola cytosol 32.16 17.17
CDY41581 Canola cytosol 32.16 16.96
CDY54618 Canola cytosol 32.16 16.96
CDX73996 Canola cytosol 32.16 16.93
CDY07941 Canola cytosol 32.16 16.93
CDY41316 Canola cytosol, extracellular 32.16 16.91
CDY13308 Canola cytosol 32.16 16.91
CDY22207 Canola cytosol 32.16 16.91
CDX80862 Canola cytosol, plastid 31.92 16.81
CDX84794 Canola cytosol 28.4 16.29
CDY23949 Canola cytosol 27.7 16.28
CDX91939 Canola cytosol, mitochondrion 28.87 15.83
CDY33111 Canola endoplasmic reticulum, plasma membrane, vacuole 26.06 15.5
CDX67563 Canola cytosol 31.92 15.47
CDX78154 Canola cytosol 26.53 15.19
CDY45794 Canola nucleus 28.17 15.06
CDX73571 Canola cytosol 26.06 14.94
CDX89923 Canola cytosol 25.59 14.27
CDX89698 Canola endoplasmic reticulum 22.54 13.81
CDX72118 Canola plastid 29.58 13.35
CDY32490 Canola mitochondrion 27.46 12.62
CDY56774 Canola plastid 30.05 12.57
CDY37450 Canola mitochondrion 27.0 12.43
CDX69950 Canola cytosol 25.12 9.8
CDY62119 Canola cytosol 24.88 9.71
CDY02982 Canola cytosol 26.76 9.67
CDY18139 Canola extracellular, vacuole 3.99 5.61
CDY69655 Canola cytosol, nucleus 0.23 0.44
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.1Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300GO:A0A078G1P2
UniProt:A0A078G1P2InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY20470ProteinID:CDY20470
ProteinID:CDY20470.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0016787GO:GO:0019538GO:GO:0030163EnsemblPlantsGene:GSBRNA2T00012561001InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF60SMART:SM00382SUPFAM:SSF52540
TIGRFAMs:TIGR01242UniParc:UPI0004EDCCF4::::
Description
BnaC04g05740DBnaC04g05740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1P2]
Coordinates
chrLK032108:+:330294..332734
Molecular Weight (calculated)
47716.0 Da
IEP (calculated)
7.565
GRAVY (calculated)
-0.372
Length
426 amino acids
Sequence
(BLAST)
001: MVREIEDNVE DKKNPRPLDE DDIALLKTYG LVPCSAPDKK VGKEIKEIAK RINDLCGIKE SDTGLALPSQ WDLVADKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPN LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.