CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003123.1-P	Field mustard	cytosol	99.14	99.14
AT3G53230.1	Thale cress	cytosol	95.93	95.34
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.59	92.82
VIT_08s0040g01480.t01	Wine grape	cytosol	92.1	92.56
CDY11249	Canola	cytosol	91.11	92.48
CDX78154	Canola	cytosol	84.81	92.34
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	92.1	92.21
KRH67721	Soybean	endoplasmic reticulum, nucleus	91.98	92.2
CDX73571	Canola	cytosol	84.57	92.19
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	92.22	92.11
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	92.22	91.88
GSMUA_Achr4P26800_001	Banana	cytosol	91.48	91.59
Zm00001d027707_P001	Maize	cytosol, plasma membrane	91.11	91.45
Zm00001d048409_P001	Maize	cytosol	90.62	91.29
CDY41316	Canola	cytosol, extracellular	90.99	90.99
CDX73996	Canola	cytosol	90.86	90.98
CDY54618	Canola	cytosol	90.74	90.97
CDY22207	Canola	cytosol	90.86	90.86
CDY41581	Canola	cytosol	90.62	90.84
CDY07941	Canola	cytosol	90.62	90.73
Zm00001d032859_P006	Maize	plasma membrane	90.62	90.62
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.49	90.61
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.62	90.51
CDX80862	Canola	cytosol, plastid	90.37	90.48
CDX67563	Canola	cytosol	96.91	89.31
GSMUA_Achr9P23550_001	Banana	mitochondrion	87.65	88.09
TraesCSU01G001000.1	Wheat	cytosol	85.93	86.67
VIT_06s0061g00340.t01	Wine grape	cytosol	80.62	85.36
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.37	84.62
TraesCS3B01G154400.1	Wheat	cytosol	82.22	84.52
TraesCS3A01G145100.1	Wheat	cytosol	81.73	83.9
HORVU0Hr1G006340.1	Barley	cytosol	81.48	83.76
TraesCS1B01G419200.1	Wheat	cytosol	81.48	83.65
TraesCS3B01G171200.1	Wheat	cytosol	81.11	83.38
TraesCS3B01G171400.1	Wheat	cytosol	74.81	83.36
EER95525	Sorghum	cytosol	80.12	83.21
TraesCS3B01G172100.1	Wheat	cytosol	81.11	83.16
TraesCS1B01G259200.1	Wheat	cytosol	80.99	83.14
TraesCS3A01G144500.1	Wheat	cytosol	54.69	83.11
TraesCS3A01G145000.1	Wheat	cytosol	71.36	83.05
TraesCS3B01G172000.1	Wheat	cytosol	80.37	83.04
KXG40206	Sorghum	cytosol	80.0	82.86
HORVU3Hr1G029450.1	Barley	cytosol	81.48	81.68
HORVU3Hr1G029440.1	Barley	cytosol	81.48	81.08
TraesCS5B01G323100.1	Wheat	cytosol	57.78	80.55
TraesCS3B01G171300.1	Wheat	cytosol	72.47	80.52
TraesCS1A01G248500.1	Wheat	cytosol	59.14	80.23
Zm00001d032117_P001	Maize	cytosol	27.04	68.44
CDY25624	Canola	cytosol	14.44	46.61
CDY20370	Canola	cytosol	12.59	37.92
CDY04161	Canola	cytosol	27.65	37.15
CDX74308	Canola	mitochondrion	31.98	36.69
CDY39032	Canola	cytosol	11.23	36.26
CDY23949	Canola	cytosol	30.74	34.34
CDX71534	Canola	cytosol	16.91	34.34
CDY22373	Canola	cytosol	16.91	34.34
CDX84794	Canola	cytosol	31.36	34.19
CDY02428	Canola	cytosol, extracellular	16.67	33.83
CDY25226	Canola	cytosol	16.67	33.83
CDX91939	Canola	cytosol, mitochondrion	32.1	33.46
CDX74842	Canola	cytosol	16.79	33.01
CDY24076	Canola	cytosol	17.28	32.86
CDY30665	Canola	cytosol	17.28	32.86
CDY36602	Canola	cytosol	17.28	32.86
CDY02494	Canola	cytosol	17.16	32.63
CDY25685	Canola	cytosol	17.16	32.63
CDY20470	Canola	cytosol, plasma membrane	16.91	32.16
CDY45794	Canola	nucleus	31.48	32.0
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.78	31.42
CDX88666	Canola	cytosol	15.31	30.69
CDY02806	Canola	cytosol	15.31	30.69
CDY32714	Canola	cytosol	15.31	30.69
CDY32995	Canola	cytosol, extracellular	15.31	30.69
CDY43865	Canola	cytosol	15.31	30.69
CDY58566	Canola	cytosol	15.31	30.69
CDY05176	Canola	cytosol	16.05	30.66
CDY18782	Canola	cytosol	16.05	30.66
CDY18801	Canola	cytosol	16.05	30.66
CDY27761	Canola	cytosol	16.05	30.66
CDX74142	Canola	cytosol	15.93	30.42
CDY40714	Canola	cytosol	15.93	30.42
CDY39033	Canola	cytosol	14.94	29.8
CDX89698	Canola	endoplasmic reticulum	25.19	29.35
CDY06847	Canola	cytosol	16.05	29.35
CDX92914	Canola	cytosol, extracellular	15.93	29.12
CDY35245	Canola	cytosol	15.93	29.12
CDY35832	Canola	cytosol	15.06	29.12
CDX70903	Canola	cytosol	14.94	29.09
CDY08201	Canola	cytosol	12.72	29.01
CDX97472	Canola	cytosol	15.8	28.76
CDY14224	Canola	cytosol	15.8	28.76
CDX72118	Canola	plastid	33.33	28.6
CDY30663	Canola	cytosol	15.19	28.47
CDY20371	Canola	cytosol, plastid	14.81	27.27
CDY56774	Canola	plastid	33.09	26.33
CDX89923	Canola	cytosol	24.81	26.31
CDY59958	Canola	cytosol	11.73	26.1
CDY32490	Canola	mitochondrion	27.65	24.16
CDY37450	Canola	mitochondrion	27.53	24.11
CDX88865	Canola	cytosol, extracellular	15.8	20.35
CDY02982	Canola	cytosol	29.01	19.93
CDY18139	Canola	extracellular, vacuole	7.16	19.14
CDX69950	Canola	cytosol	25.68	19.05
CDY62119	Canola	cytosol	25.68	19.05
CDY42324	Canola	cytosol, extracellular	15.8	17.85
CDY44958	Canola	cytosol, plasma membrane	15.8	17.75
CDY69655	Canola	cytosol, nucleus	0.99	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078FLX9
UniProt:A0A078FLX9	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	EnsemblPlants:CDY13308	ProteinID:CDY13308	ProteinID:CDY13308.1	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00071295001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0004EC0B58	SEG:seg	:

Description

BnaC06g14490DBnaC06g14490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLX9]

Coordinates

chrLK032034:-:198508..202589

Molecular Weight (calculated)

89862.2 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.384

Length

810 amino acids

Sequence
(BLAST)

001: MANQPESSDP KGAKRDFSTA ILEKKKAVNR LVVDEAINDD NSVVSLHPET MEKLQLFRGD TILLKGKKRK DTVCIALADD TCDEPKIRMN KVVRSNLRVR
101: LGDVVSIHQC PDVKYGKRVH ILPLDDTIEG ITGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV IETDPDEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEL DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDEE IDAEILNSMA VTNEHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSVGDAGGA
601: ADRVLNQLLT EMDGMSAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKERKKAET PEAMEEDEEE IAEIKASHFE ESMKFARRSV SDADIRKYQA FAQTLQQSRG IGSEFRFPDA TGTGGAAAMA GGGDPFATAG
801: GAAEDDDLYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.