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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70900
CDX88867
CDY42320
CDY44955

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G19990.1 CDX70900 AT5G19960.1 21798944
AT5G19990.1 CDX88867 AT5G19960.1 21798944
AT5G19990.1 CDY42320 AT5G19960.1 21798944
AT5G19990.1 CDY44955 AT5G19960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002279.1-P Field mustard cytosol 99.52 99.52
AT5G19990.1 Thale cress cytosol 98.57 98.57
CDX70903 Canola cytosol 96.9 97.6
AT5G20000.1 Thale cress cytosol 96.18 96.18
GSMUA_Achr7P09950_001 Banana cytosol 89.98 93.55
KRH44668 Soybean cytosol, mitochondrion, nucleus 92.84 93.06
Solyc05g018590.2.1 Tomato nucleus 92.36 92.81
VIT_09s0002g05800.t01 Wine grape cytosol 92.12 92.57
TraesCS6D01G166700.1 Wheat cytosol, golgi 92.12 92.34
TraesCS6B01G207100.1 Wheat cytosol 92.12 92.34
TraesCS6A01G177600.1 Wheat cytosol 92.12 92.34
KRH46990 Soybean nucleus 92.12 92.34
Solyc05g018570.2.1 Tomato cytosol, extracellular, nucleus, plastid 91.89 92.33
Zm00001d053616_P002 Maize cytosol 92.84 92.18
Zm00001d016439_P003 Maize cytosol, extracellular, plasma membrane 92.6 91.94
Os02t0205300-01 Rice cytosol 92.84 91.75
TraesCS7D01G350300.1 Wheat cytosol 91.89 91.02
TraesCS7B01G254400.1 Wheat cytosol 91.89 91.02
HORVU7Hr1G084550.2 Barley cytosol 91.89 91.02
TraesCS7A01G372600.1 Wheat cytosol 91.89 91.02
Os06t0600100-01 Rice plasma membrane 87.35 86.52
EER88603 Sorghum cytosol 84.49 84.49
HORVU6Hr1G036990.7 Barley cytosol 92.12 83.55
PGSC0003DMT400038718 Potato cytosol 81.62 78.98
CDX88865 Canola cytosol, extracellular 93.08 62.0
CDY44958 Canola cytosol, plasma membrane 98.57 57.28
CDY42324 Canola cytosol, extracellular 97.61 57.04
CDY20370 Canola cytosol 30.55 47.58
CDY39032 Canola cytosol 28.4 47.41
CDX74842 Canola cytosol 44.39 45.15
CDY24076 Canola cytosol 45.35 44.6
CDY36602 Canola cytosol 45.35 44.6
CDY30665 Canola cytosol 45.35 44.6
CDY25685 Canola cytosol 45.35 44.6
CDY02494 Canola cytosol 45.35 44.6
CDY20470 Canola cytosol, plasma membrane 45.11 44.37
CDY25226 Canola cytosol 42.0 44.11
CDY02428 Canola cytosol, extracellular 41.77 43.86
CDX71534 Canola cytosol 41.77 43.86
CDY22373 Canola cytosol 41.77 43.86
CDY08201 Canola cytosol 35.56 41.97
CDY39033 Canola cytosol 39.38 40.64
CDY40714 Canola cytosol 40.57 40.09
CDX74142 Canola cytosol 40.57 40.09
CDY18801 Canola cytosol 40.57 40.09
CDY05176 Canola cytosol 40.57 40.09
CDY27761 Canola cytosol 40.57 40.09
CDY18782 Canola cytosol 40.57 40.09
CDY43865 Canola cytosol 38.42 39.85
CDY58566 Canola cytosol 38.42 39.85
CDY02806 Canola cytosol 38.42 39.85
CDY32995 Canola cytosol, extracellular 38.42 39.85
CDY32714 Canola cytosol 38.42 39.85
CDX88666 Canola cytosol 38.42 39.85
CDY06847 Canola cytosol 41.05 38.83
CDY35245 Canola cytosol 40.81 38.6
CDX92914 Canola cytosol, extracellular 40.81 38.6
CDX97472 Canola cytosol 40.81 38.43
CDY14224 Canola cytosol 40.81 38.43
CDY30663 Canola cytosol 39.14 37.96
CDY20371 Canola cytosol, plastid 38.9 37.05
CDY59958 Canola cytosol 31.74 36.54
CDY25624 Canola cytosol 20.76 34.66
CDY04161 Canola cytosol 26.49 18.41
CDX74308 Canola mitochondrion 26.73 15.86
CDY33111 Canola endoplasmic reticulum, plasma membrane, vacuole 26.25 15.36
CDX73996 Canola cytosol 29.59 15.33
CDY07941 Canola cytosol 29.59 15.33
CDY41316 Canola cytosol, extracellular 29.59 15.31
CDY22207 Canola cytosol 29.59 15.31
CDY54618 Canola cytosol 29.36 15.22
CDY41581 Canola cytosol 29.36 15.22
CDY11249 Canola cytosol 28.88 15.16
CDX80862 Canola cytosol, plastid 29.12 15.08
CDX84794 Canola cytosol 26.73 15.07
CDY13308 Canola cytosol 29.12 15.06
CDY23949 Canola cytosol 26.01 15.03
CDY45794 Canola nucleus 27.68 14.55
CDX91939 Canola cytosol, mitochondrion 26.97 14.54
CDX89923 Canola cytosol 25.78 14.14
CDX67563 Canola cytosol 29.12 13.88
CDX78154 Canola cytosol 23.63 13.31
CDX73571 Canola cytosol 23.39 13.19
CDX72118 Canola plastid 28.88 12.82
CDX89698 Canola endoplasmic reticulum 21.0 12.66
CDY37450 Canola mitochondrion 27.68 12.54
CDY32490 Canola mitochondrion 27.68 12.51
CDY56774 Canola plastid 29.36 12.08
CDX69950 Canola cytosol 27.21 10.44
CDY62119 Canola cytosol 26.73 10.26
CDY02982 Canola cytosol 26.97 9.58
CDY18139 Canola extracellular, vacuole 3.34 4.62
Os06t0600301-00 Rice plasma membrane 1.67 3.1
CDY69655 Canola cytosol, nucleus 0.48 0.88
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.6Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300GO:A0A078HDC7
UniProt:A0A078HDC7InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY35832ProteinID:CDY35832
ProteinID:CDY35832.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0016787GO:GO:0019538GO:GO:0030163EnsemblPlantsGene:GSBRNA2T00059351001
InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF57SMART:SM00382
SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI0004EAB686SEG:seg::
Description
BnaC09g37640DBnaC09g37640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDC7]
Coordinates
chrLK032362:-:176577..179417
Molecular Weight (calculated)
47247.8 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.390
Length
419 amino acids
Sequence
(BLAST)
001: MAAVGVEARR PETAMEETCN AKGAVAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDINKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEDSRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Arabidopsis Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.