Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44955 | Canola | nucleus | 92.26 | 92.26 |
| CDX70900 | Canola | nucleus | 70.28 | 70.28 |
| AT5G19960.1 | Thale cress | cytosol | 56.66 | 54.3 |
| CDX88867 | Canola | nucleus | 54.18 | 40.32 |
| KXG29764 | Sorghum | nucleus | 35.91 | 35.26 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 37.15 | 34.58 |
| Zm00001d016410_P006 | Maize | nucleus | 34.98 | 34.35 |
| KRH56658 | Soybean | nucleus | 38.7 | 34.25 |
| Zm00001d053613_P001 | Maize | nucleus | 34.37 | 34.05 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 38.08 | 33.98 |
| KRH03775 | Soybean | nucleus | 36.84 | 32.6 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 39.01 | 31.98 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 32.2 | 29.8 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 31.89 | 29.34 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 31.58 | 29.06 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 30.96 | 27.86 |
| CDX99063 | Canola | nucleus | 17.03 | 18.77 |
| CDX86130 | Canola | nucleus | 15.48 | 16.67 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078HUY2 | UniProt:A0A078HUY2 | EnsemblPlants:CDY42320 | ProteinID:CDY42320 |
| ProteinID:CDY42320.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00074561001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23147 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEA264 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g09260DBnaC02g09260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUY2]
Coordinates
chrLK032520:+:256776..259191
Molecular Weight (calculated)
36883.5 Da
IEP (calculated)
5.898
GRAVY (calculated)
-1.117
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMDDNNSVY VGGLPYDVTE ESLRRVFSPY GTVLDIKIVN DQSVRGKCYG FVTFSNRRSA DDAIQDMDGK RIGGRVVRVN EVTTRFGGRL SSGAQGRFQP
101: QSPDRRSDFS CERDRYRERD RSQERRRDHY EHSHGFERRS DHGMVDRNGY KERVFEGEEG GDWRGDSGRG VNGNSDHEGR SQDTKREDSS MVDGGRGRDG
201: KDHISNSSGD HSFQVKGDIE ALIKTRDLLH DEVLVMEGRL RAKEDLFTEL QEKFERLEDL LNDEKKLTSQ RRKELAKLHK SFSRVRECTD NLKDCEQELQ
301: SLVNSVAREG VAGADEGLEN GYV
101: QSPDRRSDFS CERDRYRERD RSQERRRDHY EHSHGFERRS DHGMVDRNGY KERVFEGEEG GDWRGDSGRG VNGNSDHEGR SQDTKREDSS MVDGGRGRDG
201: KDHISNSSGD HSFQVKGDIE ALIKTRDLLH DEVLVMEGRL RAKEDLFTEL QEKFERLEDL LNDEKKLTSQ RRKELAKLHK SFSRVRECTD NLKDCEQELQ
301: SLVNSVAREG VAGADEGLEN GYV
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.