Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006526.1-P | Field mustard | nucleus | 93.78 | 92.71 |
| CDY42320 | Canola | nucleus | 40.32 | 54.18 |
| CDX70900 | Canola | nucleus | 40.09 | 53.87 |
| CDY44955 | Canola | nucleus | 39.63 | 53.25 |
| AT5G19960.1 | Thale cress | cytosol | 37.1 | 47.77 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 26.04 | 31.22 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 24.19 | 30.26 |
| KRH56658 | Soybean | nucleus | 25.35 | 30.14 |
| KRH03775 | Soybean | nucleus | 24.19 | 28.77 |
| Zm00001d016410_P006 | Maize | nucleus | 21.66 | 28.57 |
| KXG29764 | Sorghum | nucleus | 21.66 | 28.57 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 25.58 | 28.17 |
| Zm00001d053613_P001 | Maize | nucleus | 20.51 | 27.3 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 21.89 | 27.22 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 21.89 | 27.07 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 21.66 | 26.78 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 22.12 | 26.74 |
| CDX99063 | Canola | nucleus | 9.91 | 14.68 |
| CDX86130 | Canola | nucleus | 8.76 | 12.67 |
Protein Annotations
| EnsemblPlants:CDX88867 | EnsemblPlantsGene:GSBRNA2T00148949001 | Gene3D:3.30.70.330 | GO:A0A078DIV4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | ncoils:Coil | ProteinID:CDX88867 |
| ProteinID:CDX88867.1 | SEG:seg | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0004EF2533 | MapMan:35.2 |
Description
BnaA03g07820D
Coordinates
chrLK031856:-:1356885..1364460
Molecular Weight (calculated)
49136.7 Da
IEP (calculated)
6.905
GRAVY (calculated)
-0.818
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVDDANFIS LTTSPRMISA VVSLLTAPLS TLSWLLCVSF DILEIVNDQS VRGKCYGFVT FSNRRSAYDA IQEWMENIGG RVVRVNEVTT RFGGWLNTGG
101: QGRFQPQSPD GRSDFGYKRD RFSDRSRERD RTSLELNNLS VKLHLQERAY EHSHGLERRN DHDMLDRNGY KERVFQGVED GDWRGYSSNM RISGTSSHQG
201: RNEETKREDR EAESVGQKGS EKGTAKTSKP LVKGFVHDND DEVMKITKVL KNKRGGDPLF SEIHMSRLDQ AMAEPLPRVK KMSGQVNVFR EACTMPDGGR
301: GRDGKDHFSN SSGDHSFQVK EELEALTKTR DVLHDEVLVM EERLEVKEDM CSELQKNFKR LEDLLNNEKK LTSQRRKELA KLHKSYSRVR ECSDNLKGCE
401: QELQSLVNSA AREGVAGADE GLENGCVVQG VVTN
101: QGRFQPQSPD GRSDFGYKRD RFSDRSRERD RTSLELNNLS VKLHLQERAY EHSHGLERRN DHDMLDRNGY KERVFQGVED GDWRGYSSNM RISGTSSHQG
201: RNEETKREDR EAESVGQKGS EKGTAKTSKP LVKGFVHDND DEVMKITKVL KNKRGGDPLF SEIHMSRLDQ AMAEPLPRVK KMSGQVNVFR EACTMPDGGR
301: GRDGKDHFSN SSGDHSFQVK EELEALTKTR DVLHDEVLVM EERLEVKEDM CSELQKNFKR LEDLLNNEKK LTSQRRKELA KLHKSYSRVR ECSDNLKGCE
401: QELQSLVNSA AREGVAGADE GLENGCVVQG VVTN
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.