CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99063	Canola	nucleus	80.0	81.91
PGSC0003DMT400085883	Potato	mitochondrion	29.33	60.69
GSMUA_Achr10P...	Banana	nucleus	50.0	52.45
EER93167	Sorghum	nucleus	51.67	52.01
AT3G47120.1	Thale cress	nucleus	58.67	50.0
Zm00001d034710_P003	Maize	nucleus	51.33	49.2
Os03t0826400-01	Rice	nucleus	50.33	48.4
TraesCS5B01G502600.1	Wheat	cytosol	44.33	43.18
PGSC0003DMT400014369	Potato	nucleus	50.0	42.61
TraesCS5A01G488700.1	Wheat	nucleus	55.0	40.94
TraesCS5D01G503700.1	Wheat	nucleus	54.67	40.59
Solyc03g119430.2.1	Tomato	nucleus	51.0	40.48
KRH17025	Soybean	nucleus	55.0	37.84
TraesCS2B01G168700.1	Wheat	nucleus	54.67	37.53
HORVU5Hr1G115170.1	Barley	nucleus, plastid	55.33	37.39
KRH72666	Soybean	nucleus	55.0	37.33
TraesCS2A01G143700.1	Wheat	nucleus	54.0	37.07
TraesCS2D01G147300.1	Wheat	nucleus	54.0	37.07
VIT_06s0004g06440.t01	Wine grape	nucleus	52.67	36.83
CDX70900	Canola	nucleus	17.33	16.1
CDY44955	Canola	nucleus	16.67	15.48
CDY42320	Canola	nucleus	16.67	15.48
CDX88867	Canola	nucleus	12.67	8.76

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	GO:A0A078DA73	EnsemblPlants:CDX86130	ProteinID:CDX86130
ProteinID:CDX86130.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00144181001
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI0004EE768C	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

BnaC03g56450D

Coordinates

chrLK031844:-:1708588..1710049

Molecular Weight (calculated)

34510.1 Da

IEP (calculated)

8.789

GRAVY (calculated)

-1.500

Length

300 amino acids

Sequence
(BLAST)

001: MNPLTQIKWT QAINAKESDL GISEEASWHS KYKNSAYIYA GGLAFDLTEG DLLAVFAQYG EVVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: QVLGRTIKVD HCSKYTKREE EDEETRQQNR EARGVCRAFQ RGDCTRGDSC KFSHDEKRAA NTGWGHEEDR SAKWDHNKFN GPKKGGGHRG DFKPDADEKN
201: YRGKGHGERD RVEREPRSRD SYDRREQKRS GRLDDSQYTR HDAENDYARE DKRSRTHGME KSKERSRRDY NDREGEGSSR QSDSSSRKDS DYSSRDARRR

Best Arabidopsis Sequence Match ( AT3G47120.2 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE
201: EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR
301: RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.