Factsheet for TraesCS2B01G168700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G147300.1	Wheat	nucleus	97.03	97.03
TraesCS2A01G143700.1	Wheat	nucleus	97.03	97.03
HORVU5Hr1G115170.1	Barley	nucleus, plastid	85.81	84.46
TraesCS5B01G502600.1	Wheat	cytosol	54.0	76.62
EER93167	Sorghum	nucleus	48.51	71.14
PGSC0003DMT400085883	Potato	mitochondrion	22.43	67.59
Os03t0826400-01	Rice	nucleus	47.83	66.99
Zm00001d034710_P003	Maize	nucleus	47.6	66.45
GSMUA_Achr10P...	Banana	nucleus	36.84	56.29
CDX86130	Canola	nucleus	37.53	54.67
CDX99063	Canola	nucleus	35.7	53.24
Bra018163.1-P	Field mustard	nucleus	35.7	53.24
AT3G47120.1	Thale cress	nucleus	38.9	48.3
PGSC0003DMT400014369	Potato	nucleus	36.61	45.45
Solyc03g119430.2.1	Tomato	nucleus	36.84	42.59
KRH17025	Soybean	nucleus	39.13	39.22
VIT_06s0004g06440.t01	Wine grape	nucleus	38.22	38.93
KRH72666	Soybean	nucleus	38.67	38.24
TraesCS6B01G205800.2	Wheat	nucleus	11.44	14.24

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
EnsemblPlantsGene:TraesCS2B01G168700	EnsemblPlants:TraesCS2B01G168700.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12411	SEG:seg

Description

No Description!

Coordinates

chr2B:+:141559309..141564696

Molecular Weight (calculated)

50957.8 Da

IEP (calculated)

9.134

GRAVY (calculated)

-1.730

Length

437 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEAAL GLSEDASWHT KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLAVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGV CYAFQKGECS
201: RGDTCRFSHD EQVAVQGRGV CYAFQKGECS RGASCRFSHD EQRNANTDRR SREDSNARRQ HDHDPPKSHK NIPDRTKEEA RSGDRDGQSS RSELYRDRDS
301: RTRYGDRDTK DRDRNMHEKS PERSRGDRQR GDDRGREDRS DTKDRDRNGH EKSPERSRGD RQRGDDRGRE DRSDIKGRDR NGYEKSPERP RGDRQRGDDR
401: RREDRSESRR SRHDRDSGVR YERRGDKEEE WYRKSQR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.