Factsheet for Os03t0826400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93167	Sorghum	nucleus	66.03	69.13
PGSC0003DMT400085883	Potato	mitochondrion	31.09	66.9
Zm00001d034710_P003	Maize	nucleus	65.06	64.86
GSMUA_Achr10P...	Banana	nucleus	49.68	54.2
TraesCS5A01G488700.1	Wheat	nucleus	67.95	52.61
TraesCS5D01G503700.1	Wheat	nucleus	67.95	52.48
TraesCS5B01G502600.1	Wheat	cytosol	51.28	51.95
CDX86130	Canola	nucleus	48.4	50.33
TraesCS2D01G147300.1	Wheat	nucleus	67.95	48.51
TraesCS2A01G143700.1	Wheat	nucleus	67.63	48.28
HORVU5Hr1G115170.1	Barley	nucleus, plastid	68.59	48.2
CDX99063	Canola	nucleus	45.19	48.12
TraesCS2B01G168700.1	Wheat	nucleus	66.99	47.83
Bra018163.1-P	Field mustard	nucleus	44.55	47.44
PGSC0003DMT400014369	Potato	nucleus	48.72	43.18
Solyc03g119430.2.1	Tomato	nucleus	48.4	39.95
AT3G47120.1	Thale cress	nucleus	44.87	39.77
KRH17025	Soybean	nucleus	52.24	37.39
KRH72666	Soybean	nucleus	52.24	36.88
VIT_06s0004g06440.t01	Wine grape	nucleus	49.68	36.13

Protein Annotations

Gene3D:1.10.150.840	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4334639	ProteinID:AAK82455.1	ProteinID:AAL79760.1
ProteinID:ABF99645.1	EMBL:AK071472	ProteinID:BAF13677.1	ProteinID:BAS87159.1	ncoils:Coil	ProteinID:EAZ29133.1
GO:GO:0000384	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005686	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	GO:GO:0046872	GO:GO:0070274	GO:GO:0071011
GO:GO:0071013	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0826400
EnsemblPlants:Os03t0826400-01	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139
PANTHER:PTHR23139:SF34	UniProt:Q10B98	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00000A6053	RefSeq:XP_015628559.1	InterPro:Znf_CCCH	SEG:seg	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0826400-01)

Coordinates

chr3:+:34712797..34715006

Molecular Weight (calculated)

36260.5 Da

IEP (calculated)

9.654

GRAVY (calculated)

-1.533

Length

312 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEALL GIGEDGSWHA KFKDSAYVFV GGIPYDLTEG DLLAVFAQYG EVVDVNLVRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: KVLGRIVRVD HVSKYKKKEE EDEEELQKKR EARGVCYAFQ KGECNRGASC RYSHDEQRNA NTGWGSKEES KARWEHDRHH EPPMSHKKFP SSAGEQRFPD
201: RAKEENKSTG REGQSSRSEA YKDRDSRLRH SDRGSKDHDR YRHDRSPERS RGDRQRNNDR YAQGRDEKSE RYRSEVKHDE GDQKRSRRDT DSSGHYERRG
301: NEDSERYRKS RR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.