Factsheet for Bra018163.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99063	Canola	nucleus	97.61	97.61
PGSC0003DMT400085883	Potato	mitochondrion	29.69	60.0
GSMUA_Achr10P...	Banana	nucleus	51.54	52.8
EER93167	Sorghum	nucleus	51.88	51.01
AT3G47120.1	Thale cress	nucleus	60.07	50.0
Zm00001d034710_P003	Maize	nucleus	51.54	48.24
Os03t0826400-01	Rice	nucleus	47.44	44.55
PGSC0003DMT400014369	Potato	nucleus	52.9	44.03
TraesCS5B01G502600.1	Wheat	cytosol	45.73	43.51
Solyc03g119430.2.1	Tomato	nucleus	53.24	41.27
TraesCS5A01G488700.1	Wheat	nucleus	52.9	38.46
TraesCS5D01G503700.1	Wheat	nucleus	52.56	38.12
KRH17025	Soybean	nucleus	54.95	36.93
KRH72666	Soybean	nucleus	55.29	36.65
VIT_06s0004g06440.t01	Wine grape	nucleus	52.56	35.9
TraesCS2B01G168700.1	Wheat	nucleus	53.24	35.7
TraesCS2A01G143700.1	Wheat	nucleus	52.56	35.24
TraesCS2D01G147300.1	Wheat	nucleus	52.56	35.24
HORVU5Hr1G115170.1	Barley	nucleus, plastid	52.9	34.91
Bra020076.1-P	Field mustard	nucleus	18.43	16.72
Bra006526.1-P	Field mustard	nucleus	15.7	10.48

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra018163	EnsemblPlants:Bra018163.1	EnsemblPlants:Bra018163.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0016607	GO:GO:0046872	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	UniProt:M4DNS5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI000253F46E	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

AT3G47120 (E=2e-091) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:10737612..10738742

Molecular Weight (calculated)

33662.1 Da

IEP (calculated)

7.997

GRAVY (calculated)

-1.457

Length

293 amino acids

Sequence
(BLAST)

001: MNPLTQIKWT QAINAKESDL GISEEASWHS KYKNSAYIYA GGLAFDLTEG DLLAVFAQYG EVVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: QVLGRTIKVD HCSKYTKREE EDEDTRQHNR EARGVCRAFQ RGDCTRGDSC KFSHDEKRAA NTGWGHEEDR SAKWDHDKFN GPNKGGGHRG DFQPDPNYRG
201: KGRGERDRVD REPRSRDSYD RREQKISGRL DDSQYSRHDA ENDYARDDKR SRTHDMEKSK ERSRRDYNDR EGEGSSRQSG KDSDYSSRDA RRR

Best Arabidopsis Sequence Match ( AT3G47120.2 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE
201: EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR
301: RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.