Factsheet for Bra006526.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra005847.1-P
Bra006526.1-P
Bra007528.1-P
Bra009093.1-P
Bra011536.1-P
Bra014221.1-P
Bra014494.1-P
Bra017658.1-P
Bra018126.1-P
Bra020076.1-P
Bra024408.1-P
Bra027459.1-P
Bra029613.1-P
Bra031849.1-P
Bra032668.1-P
Bra033217.1-P
Bra034628.1-P
Bra039652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19960.1	Bra032668.1-P	AT1G02140.1	21798944
AT5G19960.1	Bra033217.1-P	AT1G02140.1	21798944
AT5G19960.1	Bra014221.1-P	AT1G49850.1	21798944
AT5G19960.1	Bra039652.1-P	AT1G49850.1	21798944
AT5G19960.1	Bra000304.1-P	AT2G43370.1	21798944
AT5G19960.1	Bra029613.1-P	AT3G06980.1	21798944
AT5G19960.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G19960.1	Bra007528.1-P	AT3G60360.1	21798944
AT5G19960.1	Bra014494.1-P	AT3G60360.1	21798944
AT5G19960.1	Bra011536.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra017658.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra034628.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra005847.1-P	AT5G05190.1	21798944
AT5G19960.1	Bra009093.1-P	AT5G05190.1	21798944
AT5G19960.1	Bra006526.1-P	AT5G19960.1	21798944
AT5G19960.1	Bra020076.1-P	AT5G19960.1	21798944
AT5G19960.1	Bra027459.1-P	AT5G42820.1	21798944
AT5G19960.1	Bra024408.1-P	AT5G65683.1	21798944
AT5G19960.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88867	Canola	nucleus	92.71	93.78
Bra020076.1-P	Field mustard	nucleus	38.72	52.63
AT5G19960.1	Thale cress	cytosol	36.9	48.07
GSMUA_Achr7P08450_001	Banana	nucleus	25.06	30.39
KRH56658	Soybean	nucleus	24.83	29.86
VIT_11s0016g04610.t01	Wine grape	nucleus	23.46	29.68
KXG29764	Sorghum	nucleus	22.1	29.48
Zm00001d016410_P006	Maize	nucleus	22.1	29.48
KRH03775	Soybean	nucleus	23.69	28.49
TraesCS6A01G178400.1	Wheat	nucleus	22.32	28.08
TraesCS6D01G166200.2	Wheat	nucleus	22.32	27.92
Zm00001d053613_P001	Maize	nucleus	20.73	27.91
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	24.83	27.66
TraesCS6B01G205800.2	Wheat	nucleus	22.1	27.64
HORVU6Hr1G036810.5	Barley	nucleus	22.55	27.58
Bra018163.1-P	Field mustard	nucleus	10.48	15.7

Protein Annotations

EnsemblPlants:Bra006526.1	EnsemblPlants:Bra006526.1-P	EnsemblPlantsGene:Bra006526	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	ncoils:Coil	SEG:seg
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000253FFC1	UniProt:M4CQN7	MapMan:35.2	:

Description

AT5G19960 (E=3e-052) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:+:3910789..3918237

Molecular Weight (calculated)

49715.3 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.832

Length

439 amino acids

Sequence
(BLAST)

001: MTVDDANFIS LTTSPRMISA VVSLLTAPLS TLSWLLCVSF DILEIVNDQS VRGKCYGFVT FSNRRSAYDA IQEWMENIGG RVVRVNEVTT RFGGWLNTGG
101: QGRFQPQSPD GRSDFGYKRD RFSDRSRERD RTSLELNNLS VKLHLQERAY EHSHGLERRN DHDMLDRNGY KERVFQGVED GDWRGYRSYG DSSNMRISGT
201: SSHQGRNEET KREDREAESV GQKGSEKGTA KTSKPLVKGF VHDNDDEVMK ITKVLKNKRG GDPLFSEIHM SRLDQAMAEP LPRVKKMSGQ VNVFREACTM
301: PDGGRGRDGK DHFSNSSGDH SFQVKEELEA LTKTRDVLHD EVLVMEERLE VKEDMCSELQ KNFKRLEDLL NNEKKLTSQR RKELAKLHKS YSRVRECSDN
401: LKGCEQELQS LVNSAAREGV AGADEGLENG CVVQGVVTN

Best Arabidopsis Sequence Match ( AT5G19960.1 )
(BLAST)

001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP

Arabidopsis Description

Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.