Factsheet for Bra029613.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra002404.1-P
Bra006620.1-P
Bra023148.1-P
Bra034827.1-P
Bra039871.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	Bra023148.1-P	AT1G30860.1	21798944
AT3G06980.1	Bra039871.1-P	AT1G30860.1	21798944
AT3G06980.1	Bra001412.1-P	AT3G11590.1	21798944
AT3G06980.1	Bra034827.1-P	AT3G11590.1	21798944
AT3G06980.1	Bra002404.1-P	AT5G22310.1	21798944
AT3G06980.1	Bra006620.1-P	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24656	Canola	mitochondrion	69.35	81.0
CDY05302	Canola	plastid	62.63	72.47
KRH51370	Soybean	nucleus	41.53	58.3
KRH60674	Soybean	nucleus	40.73	57.39
AT3G06980.1	Thale cress	plastid	52.96	50.45
Zm00001d048531_P001	Maize	plastid	43.55	49.47
TraesCS3B01G568500.1	Wheat	mitochondrion	42.88	49.46
VIT_05s0020g01130.t01	Wine grape	mitochondrion	46.77	49.22
Os03t0108600-01	Rice	mitochondrion, plastid	42.34	49.14
EER95670	Sorghum	mitochondrion, plastid	43.28	49.09
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	42.47	48.02
TraesCS4D01G359000.1	Wheat	plastid	42.47	47.81
HORVU4Hr1G090840.3	Barley	plastid	42.47	47.31
GSMUA_Achr3P24670_001	Banana	plastid	40.32	44.98
Solyc11g045190.1.1	Tomato	nucleus	25.67	38.82
Bra038370.1-P	Field mustard	cytosol	13.58	27.98
Bra000690.1-P	Field mustard	plastid	18.55	22.26
Bra035413.1-P	Field mustard	mitochondrion, plastid	13.58	17.66

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra029613	EnsemblPlants:Bra029613.1	EnsemblPlants:Bra029613.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0006968	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009817	GO:GO:0009987	GO:GO:0016787	GO:GO:0071369
GO:GO:0071395	GO:GO:0071446	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4ELE5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000254809B	SEG:seg	:	:

Description

AT3G06980 (E=1e-260) | DEAD/DEAH box helicase, putative

Coordinates

chrA05:-:22995744..22998660

Molecular Weight (calculated)

83175.5 Da

IEP (calculated)

8.281

GRAVY (calculated)

-0.633

Length

744 amino acids

Sequence
(BLAST)

001: MLARAPPPSV TFPARSKVCN RREIVRLFRY GGGTRAGFTR SCSNEVVSDS TDDGFIVIKA EHHEKELYPP PPSDLASSIP SESSRRDGSR SRGVTASFGR
101: LKAQKVKALV GKVTQKKQQV SRNEEEEDED DDVFEDEEFG GSSILDLMRK KLAMKDLPSS GKSSEVKRFS RVQESREQRD RDRSQTNERD SNGYAANSRG
201: RGDRPSLAKD LDTFKGRDRA VGEVSKFSDN ERAGSRSSYS KDSAANSRGR EDRRFVNKES DTYQRRDRAT TDEFSDSRYF NDNERGGSYS SYSRASAGNS
301: RGWGDRRSVV YARDIEDWRE RGNRTKATRE TGFFSRKSFA EVGCSEDMTK ALKENNFDRP AHIQALAFAP VVDGKSCIIA DQSGSGKTLA YLVPVIQRLR
401: EEELQGLSKS SSGCPRVIVL VPTAELASQV LANCRLISKS GVPFRSMVVT GGFKQRTQLE NLEQGVDVLI ATPGRFTYLM NEGMLGLSNL RCAILDEVDI
501: LFGDEEFESA LQNLISSSPV TAQYLFVTAT LPLEIYNKLV EVFPDCEVVM GPRVHRVSNS LEEVLVDCSG DDNAEKTPET AFQNKKAALL QIIEENPVAK
601: TIIFCNKIET CRKVENIFKR LDRNERQLHV LPFHAALAQG ARLTNMEEFT SSHPENHSLF LVCTDRASRG IDFSGVDHVV LFDFPRDPSE YVRRVGRTAR
701: GARGEGKAFV FVVGKQVTLA RRIIERNQKG HPVHDVPNAY EFTT

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.