Factsheet for TraesCS4D01G359000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT3G06980.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT3G06980.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT3G06980.1	TraesCS2A01G282200.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS2B01G299400.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS2D01G281000.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS7A01G134600.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS7B01G035800.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS7D01G134000.1	AT3G11590.1	21798944
AT3G06980.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT3G06980.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT3G06980.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT3G06980.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT3G06980.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT3G06980.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	95.76	96.2
HORVU4Hr1G090840.3	Barley	plastid	93.8	92.81
TraesCS3B01G568500.1	Wheat	mitochondrion	89.26	91.47
Os03t0108600-01	Rice	mitochondrion, plastid	69.44	71.61
Zm00001d048531_P001	Maize	plastid	68.99	69.62
Solyc11g045180.1.1	Tomato	nucleus	18.76	68.51
EER95670	Sorghum	mitochondrion, plastid	67.78	68.29
KRH51370	Soybean	nucleus	44.18	55.09
KRH60674	Soybean	nucleus	43.72	54.73
CDX73166	Canola	cytosol	15.13	52.08
GSMUA_Achr3P24670_001	Banana	plastid	49.77	49.33
VIT_05s0020g01130.t01	Wine grape	mitochondrion	49.47	46.25
Bra029613.1-P	Field mustard	plastid	47.81	42.47
AT3G06980.1	Thale cress	plastid	47.35	40.08
TraesCS5D01G206600.1	Wheat	mitochondrion	17.25	20.04

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950
GO:GO:0006968	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009817
GO:GO:0009987	GO:GO:0016787	GO:GO:0071369	GO:GO:0071395	GO:GO:0071446	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G359000	EnsemblPlants:TraesCS4D01G359000.1
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:506463651..506466685

Molecular Weight (calculated)

72319.9 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.391

Length

661 amino acids

Sequence
(BLAST)

001: MDVAGAQARA LPLLLGRPAV SLRCSVSFSC GGARRSWVSS ATADGEDGGP GYERVAMDTP GAYRLVDRST GKSVIVWGGV DDGGEPGVPS PAVLSRVTAD
101: RSASKDGGTF YTTGAANGGT TAGVGSFGRL KAQKVQALAR RSAAQLKREG TSGRTSIARR NEPSSADSDE EGSNYGRRKF VSDPARRAKP NGDSRDERSR
201: AVRSLNSVLR QYKGDDDSDF SDEEPASGPK VWGKVADATS YRREDRKQKV PLDSGFFSRR SFKEIGCGDE ILGALRTFGF PQPSHIQAMA YGPVLEGRSC
301: IIADQSGSGK TLAYLCPIVQ NLRKEEAMGI HKPSPRNPRV IILTPTAELS SQVLQNCRSI SKSGVPFRSM VATGGFRQKT QLESLDQELD VLIATPGRFL
401: YLLQEGFVQL NNLRCAVFDE VDILFSEEGF EQVLHQLITV APVTTQYLFV TATLPLDIYN KVVETFPDCE VLMGPSVHRT SARLEEILVD CSGNDNDEKN
501: PETAFSNKRT ALLKIIEESP VRKTIVFCNK IETCRKVENV LTRLDRKATQ IKVLPFHAAL DQAKRIANMK EFLKKQTTDS MFLVCTDRAS RGIDFTNVNH
601: VVLFDYPRDP SEYVRRVGRT ARGASGDGKA FVFAVGKQVS LARRVMERNL KGHPLHDVPC F

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.