Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0506100-00 | |
| Os03t0107500-00 | |
| Os04t0382800-00 | |
| Os07t0499800-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95670 | Sorghum | mitochondrion, plastid | 81.44 | 79.57 |
| Zm00001d048531_P001 | Maize | plastid | 81.28 | 79.54 |
| TraesCS3B01G568500.1 | Wheat | mitochondrion | 71.45 | 71.01 |
| TraesCS5A01G548800.2 | Wheat | mitochondrion, plastid | 72.23 | 70.36 |
| HORVU4Hr1G090840.3 | Barley | plastid | 72.39 | 69.46 |
| TraesCS4D01G359000.1 | Wheat | plastid | 71.61 | 69.44 |
| Solyc11g045180.1.1 | Tomato | nucleus | 19.19 | 67.96 |
| KRH51370 | Soybean | nucleus | 46.49 | 56.23 |
| KRH60674 | Soybean | nucleus | 45.4 | 55.11 |
| CDX73166 | Canola | cytosol | 15.6 | 52.08 |
| GSMUA_Achr3P24670_001 | Banana | plastid | 52.73 | 50.67 |
| VIT_05s0020g01130.t01 | Wine grape | mitochondrion | 50.55 | 45.83 |
| Bra029613.1-P | Field mustard | plastid | 49.14 | 42.34 |
| AT3G06980.1 | Thale cress | plastid | 48.36 | 39.69 |
| Os01t0184500-01 | Rice | mitochondrion | 21.68 | 22.24 |
| Os09t0383400-01 | Rice | mitochondrion | 16.38 | 21.08 |
Protein Annotations
Description
RNA helicase 50, BTH-induced RNA helicase 1Similar to DEAD-box ATP-dependent RNA helicase 50. (Os03t0108600-01)
Coordinates
chr3:+:505922..509002
Molecular Weight (calculated)
70807.2 Da
IEP (calculated)
9.435
GRAVY (calculated)
-0.437
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAGAQAGI LPLLLRHPAS LRGSLSLSCG GARRSWAAAA ATAEGGGGEE GRGYERVPMD TPGAYRLVDR ATGRSVIVWG GTDDVSMPSP AVLSTTTRVP
101: DRPKENGRST SIGNFGRLKA QKVKVLARRS AHLKREDSGR ISTSRFSESP SDESDEDGTY FERDRARNTR QNSRSRDDKT RGAHSLNSVL RQYRGADDLD
201: FPGSEATSGS KRWGNISDVT FGRQNQRQKG PLDSGFFSRR SFKEIGCSDE ILGALRSFGF PRPSHIQAMA YRPVLEGKSC IIGDQSGSGK TLAYLCPVVQ
301: NLRKEEVEGL HRSSPRNPRV VVLTPTAELA SQVLNNCRSI SKSGVPFRSM VATGGFRQKT QLESLDQELD VLIATPGRFL YLLQEGFVQL NNLRCVVLDE
401: VDILYGEESF EQVLHQLITV APLTTQYLFV TATLPLDIYN KVVETFPDCE LIMGPGVHRT SSRLEEILVD CSGDDNEEKN PETAFSNKKS ALVKIIEESP
501: VRKTIIFCNK IETCRKVENA LRRVDRKASQ IKVLPFHAAL DQQQRIANIK EFLNKQTADS MFLVCTDRAS RGIDFANVNH VVLFDYPRDP SEYVRRVGRT
601: ARGASGNGKA FVFAVGKQVS LARRVMERNI KGHPLHDVPC V
101: DRPKENGRST SIGNFGRLKA QKVKVLARRS AHLKREDSGR ISTSRFSESP SDESDEDGTY FERDRARNTR QNSRSRDDKT RGAHSLNSVL RQYRGADDLD
201: FPGSEATSGS KRWGNISDVT FGRQNQRQKG PLDSGFFSRR SFKEIGCSDE ILGALRSFGF PRPSHIQAMA YRPVLEGKSC IIGDQSGSGK TLAYLCPVVQ
301: NLRKEEVEGL HRSSPRNPRV VVLTPTAELA SQVLNNCRSI SKSGVPFRSM VATGGFRQKT QLESLDQELD VLIATPGRFL YLLQEGFVQL NNLRCVVLDE
401: VDILYGEESF EQVLHQLITV APLTTQYLFV TATLPLDIYN KVVETFPDCE LIMGPGVHRT SSRLEEILVD CSGDDNEEKN PETAFSNKKS ALVKIIEESP
501: VRKTIIFCNK IETCRKVENA LRRVDRKASQ IKVLPFHAAL DQQQRIANIK EFLNKQTADS MFLVCTDRAS RGIDFANVNH VVLFDYPRDP SEYVRRVGRT
601: ARGASGNGKA FVFAVGKQVS LARRVMERNI KGHPLHDVPC V
001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
Arabidopsis Description
RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.