Factsheet for VIT_05s0020g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_06s0080g00930.t01
VIT_08s0007g02790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT3G06980.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT3G06980.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51370	Soybean	nucleus	47.1	62.83
KRH60674	Soybean	nucleus	46.25	61.93
CDY24656	Canola	mitochondrion	48.66	54.0
CDY05302	Canola	plastid	47.81	52.57
Os03t0108600-01	Rice	mitochondrion, plastid	45.83	50.55
GSMUA_Achr3P24670_001	Banana	plastid	47.38	50.22
TraesCS3B01G568500.1	Wheat	mitochondrion	45.4	49.77
TraesCS4D01G359000.1	Wheat	plastid	46.25	49.47
Zm00001d048531_P001	Maize	plastid	45.83	49.47
EER95670	Sorghum	mitochondrion, plastid	45.83	49.39
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	45.83	49.24
HORVU4Hr1G090840.3	Barley	plastid	45.54	48.2
Bra029613.1-P	Field mustard	plastid	49.22	46.77
Solyc11g045190.1.1	Tomato	nucleus	32.25	46.34
AT3G06980.1	Thale cress	plastid	47.52	43.02
VIT_18s0001g02530.t01	Wine grape	plastid	20.23	22.52
VIT_01s0026g00640.t01	Wine grape	plastid	16.83	20.07

Protein Annotations

EntrezGene:100245866	wikigene:100245866	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM458796	ProteinID:CAN81123
ProteinID:CAN81123.1	ProteinID:CCB50308	ProteinID:CCB50308.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HE56	EMBL:FN595749
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0006968	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719
GO:GO:0009817	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0071369	GO:GO:0071395
GO:GO:0071446	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100245866	wikigene:LOC100245866	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001983215	ArrayExpress:VIT_05s0020g01130	EnsemblPlantsGene:VIT_05s0020g01130	EnsemblPlants:VIT_05s0020g01130.t01
unigene:Vvi.1935	RefSeq:XP_002275635	RefSeq:XP_002275635.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:2881364..2896580

Molecular Weight (calculated)

78470.5 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.334

Length

707 amino acids

Sequence
(BLAST)

001: MLAKGLVSLP SESLRLRWKQ SQLQTPFGCR SIPCRSRKSK VMLVTARYSR RQMDTPGAYQ LIDDETGEKF IVWGGIDDDP PIPSKDVLSW NPVDNNTPTP
101: SKDGHAGIEP AAAVKKDVFP KAQTKGVTGS FGRLKAQRVK ALTTKTSKAK RELNECDDNE LEVEGAPSRR SIGSHSELEF MDEKKKLLIH GGNASRAFRR
201: REIKDVIQTT GEIKDKIHSD KTVKRDIGKF SELQITPEKP HRSDNKIAGA DVLVPRVSTA NLQGWGYGET MRNFEFETTN IPKRRGKGNS LADSDFFSGK
301: SFRDLGCSDY MIESLRGQLF VRPSHIQAMA FATVMEGKSC IIADQSGSGK TLAYLLPVIQ RLREEELQGL GKSSAGCPQV VILVPTAELA SQVLSNCRSI
401: SKFGAPFRSM AATGGFRQRT QLENLQQDLD VLIATPGRFM FLIKEGFLQL TNLRCAVLDE VDILLNDEDF ELALQTLINS SPVTMQYLFV TATLPVGIYN
501: KLVEVFPDCE VIMGPGMHRI SSRLEEVLVD CSGDDGTEKT PESAFLNKKS ALLQLVEGSP VSRTIVFCNK IETCRKVENV LKHFDRKGVR LRVLAFHAAL
601: TQESRLANLK EFLNSHSEGV SLFLVCTDRA SRGIDFAKVD HVVLFDFPRD PSEYVRRVGR TARGAGGKGK AFVYVVGKQV SLARRIIERN KKGHPLHNVP
701: SAYELMS

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.