Factsheet for GSMUA_Achr3P24670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P33210_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P00390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT3G06980.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944
AT3G06980.1	GSMUA_Achr6P08260_001	AT3G11590.1	21798944
AT3G06980.1	GSMUA_Achr6P16290_001	AT3G11590.1	21798944
AT3G06980.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT3G06980.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51370	Soybean	nucleus	43.63	54.91
KRH60674	Soybean	nucleus	42.13	53.22
Os03t0108600-01	Rice	mitochondrion, plastid	50.67	52.73
Zm00001d048531_P001	Maize	plastid	51.42	52.37
EER95670	Sorghum	mitochondrion, plastid	51.27	52.13
TraesCS3B01G568500.1	Wheat	mitochondrion	49.92	51.63
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	49.48	50.15
TraesCS4D01G359000.1	Wheat	plastid	49.33	49.77
HORVU4Hr1G090840.3	Barley	plastid	49.03	48.95
CDY05302	Canola	plastid	46.18	47.9
VIT_05s0020g01130.t01	Wine grape	mitochondrion	50.22	47.38
CDY24656	Canola	mitochondrion	44.83	46.94
Solyc11g045190.1.1	Tomato	nucleus	30.13	40.85
Bra029613.1-P	Field mustard	plastid	44.98	40.32
AT3G06980.1	Thale cress	plastid	43.78	37.39
GSMUA_Achr9P28700_001	Banana	nucleus	18.59	25.41
GSMUA_Achr8P23590_001	Banana	mitochondrion	17.39	19.5

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006968	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009817
GO:GO:0009987	GO:GO:0016787	GO:GO:0071369	GO:GO:0071395	GO:GO:0071446	EnsemblPlantsGene:GSMUA_Achr3G24670_001
EnsemblPlants:GSMUA_Achr3P24670_001	EnsemblPlants:GSMUA_Achr3T24670_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0SHI3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295E949	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 50 [Source:GMGC_GENE;Acc:GSMUA_Achr3G24670_001]

Coordinates

chr3:+:25133666..25140349

Molecular Weight (calculated)

73719.0 Da

IEP (calculated)

9.033

GRAVY (calculated)

-0.300

Length

667 amino acids

Sequence
(BLAST)

001: MLASGAPPPP LLQKDLLFSY SLQSPLLPPL LSPTRRLFAL RRRCGCSFER AARGERDESP VVAAASGRHG YERIPMETAG AYRLVDRETG EKFIVWGGSD
101: NNDDADTPIP SAEVLSWKPP TADGRQEGEQ SLSFGRLKAQ KVKSLIKKTS KNYMDDSKIG SVTFVGDSPS SDTNRTDSFA TNSLRLNSRE DDYASFLDRS
201: VPRNASFRGW GGAASNRAGT AVRSKQHKKM ATNAGFFSRK SFKDVGCTDD MVGALRGLTF LRPSHIQAMA YGPIIEGKTC IVADQSGSGK TLAYLAPTIQ
301: CLRQEEILGL GKASSRSPRV IILVPTAELA SQVLSNCRSI AKYGVPFRSM VATGGFRQKT QLDNLNEESD VLIATPGRYM YLLQEGFLQL TNLRCVVLDE
401: VDILFRDDGF EHVLESFISS APVSAQYLFV TATLPVDIYN KVVEIFPDSE VIMGPGMHRT SSGLEEVLVD CSGAEGEEKN PDTAFQNKKS ALLQLLELPV
501: PKTIVFCNKI ETCRMVENVL NRFDRKGSQI QVLPFHAAIA QEIRLSNMRE FLNSRSKDSK FLICTDRASR GIDFAGVDHV VLFDFPRDPS EYVRRVGRTA
601: RGAGGKGKAY VFVVGKQFGA IARHIQEKLS NVVSNTPTTD PDLLYDWLRK PNLISIRWFS DWRTTSK

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.