Factsheet for GSMUA_Achr8P23590_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	16.64	64.29
CDY64618	Canola	cytosol	12.77	58.02
TraesCS5D01G206600.1	Wheat	mitochondrion	54.12	56.59
TraesCS5B01G199500.1	Wheat	mitochondrion	53.95	56.41
Zm00001d020357_P003	Maize	plastid	53.95	55.92
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	52.44	55.81
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	54.96	54.68
KXG35557	Sorghum	mitochondrion	54.12	54.03
Os09t0383400-01	Rice	mitochondrion	45.04	53.82
VIT_01s0026g00640.t01	Wine grape	plastid	53.45	53.63
TraesCS5A01G200900.1	Wheat	mitochondrion	54.12	53.4
Bra035413.1-P	Field mustard	mitochondrion, plastid	48.57	50.52
CDY69637	Canola	mitochondrion, plastid	45.71	50.28
CDY61158	Canola	plastid	48.24	50.17
HORVU2Hr1G060040.2	Barley	plastid	11.09	49.62
AT1G59990.1	Thale cress	plastid	47.56	48.71
KRG99241	Soybean	plastid	47.23	48.53
CDY64619	Canola	cytosol	15.63	48.44
GSMUA_Achr9P28700_001	Banana	nucleus	18.32	22.34
GSMUA_Achr3P24670_001	Banana	plastid	19.5	17.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	EnsemblPlantsGene:GSMUA_Achr8G23590_001	EnsemblPlants:GSMUA_Achr8P23590_001	EnsemblPlants:GSMUA_Achr8T23590_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TT12	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002954D35
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 22 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23590_001]

Coordinates

chr8:+:28004159..28010754

Molecular Weight (calculated)

65702.1 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.382

Length

595 amino acids

Sequence
(BLAST)

001: MHPVRQPPLL HCFRAALSSR HPLCLLFLAP RPSQSSPRAS ISAPWPRLKP LGRTRTYSVA TKVADEPAAE WSGGGGDGDG DGNGSYFFAG EGVSWKSLGI
101: SDHLSHVLAK ASLLRPSLVQ AACIPHILTG KDVIIAAETG SGKTHGYLVP LIEKLCRNLD PNKGTDVSKG NPEKHKKTYL VLCPNVMLCE QVADMANNLL
201: DDSGESLVKV AAVCGRRGWP VAHPDILVST PVALLNYLFE FDPEKKRRAN FLQNIKSVVF DEADMLLCGS FQNQVIRLIN MLRFEEKLVS KMQDSAKESV
301: IDEDNKCNME LKSDDDNYKQ LLNNDEEDGD NCNDDEGLES ESEELNTSVK DWKRVRKIYT RSKQYVFVAA TLPSSGKRTA GGVLKQMFPD AICVSGSFLH
401: RHNPRLEQRW IEVTPDSQVD ALLDAVNYGY RCKAPDSHVD ASRTMVFANT VDAVQSVAKI LERVGLECIL YHREGSLEER TSNLNHFRKN GGIFVCTDAA
501: SRGLDIPNVS HVIQAEFATS AVDFLHRVGR TARAGQFGTV TSLYTRSNQD LVCAVRQAER TGEPVENAFS RKRSFRNKLK KRGRNTSEGA SLASV

Best Arabidopsis Sequence Match ( AT1G59990.2 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRGK

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.