Factsheet for Zm00001d020357_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35557	Sorghum	mitochondrion	87.8	84.56
TraesCS5B01G199500.1	Wheat	mitochondrion	74.56	75.22
TraesCS5D01G206600.1	Wheat	mitochondrion	74.04	74.69
Os09t0383400-01	Rice	mitochondrion	64.46	74.3
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	74.56	71.57
TraesCS5A01G200900.1	Wheat	mitochondrion	73.69	70.15
CDY24505	Canola	cytosol	17.07	63.64
HORVU2Hr1G060040.2	Barley	plastid	14.29	61.65
CDY64618	Canola	cytosol	13.76	60.31
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	54.18	55.64
GSMUA_Achr8P23590_001	Banana	mitochondrion	55.92	53.95
VIT_01s0026g00640.t01	Wine grape	plastid	55.57	53.79
Bra035413.1-P	Field mustard	mitochondrion, plastid	50.35	50.52
CDY61158	Canola	plastid	50.17	50.35
CDY69637	Canola	mitochondrion, plastid	46.86	49.72
KRG99241	Soybean	plastid	50.0	49.57
CDY64619	Canola	cytosol	16.55	49.48
AT1G59990.1	Thale cress	plastid	49.48	48.88
Zm00001d048531_P001	Maize	plastid	21.43	18.78

Protein Annotations

EntrezGene:103632701	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6I3Q1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONM54771.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI000220A643	EnsemblPlantsGene:Zm00001d020357	EnsemblPlants:Zm00001d020357_P003	EnsemblPlants:Zm00001d020357_T003
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 22

Coordinates

chr7:+:108875811..108882438

Molecular Weight (calculated)

63406.9 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.247

Length

574 amino acids

Sequence
(BLAST)

001: MALHHLRLAP LALLRAASLP PLASSRIAAR GHRRVLLFAP PSWPWRLLSP GARPRALATA AAEADDATSG SGNEFFAEST SWASLGVSER LASALCSAGL
101: SRPSLVQATC IPHVLMANDV IVAAETGSGK THGYLVPLIE KLCSKSSTTK DDNCQDTTPG AHDMVLVLCP NVMLCEQVVR MANSLLDESG KPLKRAAAVC
201: GPNGWPAVHP DILVATPAAL LNYLFDYDPE KRRRERFMRN VKFVVFDEAD MLLCGSFENQ VIRLINMLRF DEKLLSRAQD SGKDISLGSD DEYHEDSKFE
301: TAEFGSSDKE IEDNIVEDRL VKLENSHVGA HKDWRRVRKI YRRSKQYVFV AATLPQSGKK TAGGVLQRMF PDAVWVSGTY LHRHNPRLER RWIEVTADTQ
401: VDALLNAVKY GLKSEVHDAK DVPRRTMVFT NTVDAANSVS DILHRVGIPC ILYHRESSLK ERANNLQSFR ENGGVLVCTD AAARGLDVPN VSHVIQAEFA
501: ACAVDFLHRV GRTARAGQSG IVTSLYTEAN RDLVRAVRQA EELAQPVEGA FSRKRSFRNK LKKQALQKRE ALLS

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.