Factsheet for TraesCS5A01G200900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G206600.1	Wheat	mitochondrion	92.21	97.72
TraesCS5B01G199500.1	Wheat	mitochondrion	90.55	95.96
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	89.55	90.3
Os09t0383400-01	Rice	mitochondrion	61.69	74.7
Zm00001d020357_P003	Maize	plastid	70.15	73.69
KXG35557	Sorghum	mitochondrion	71.97	72.82
CDY24505	Canola	cytosol	15.75	61.69
CDY64618	Canola	cytosol	12.6	58.02
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	51.58	55.64
GSMUA_Achr8P23590_001	Banana	mitochondrion	53.4	54.12
VIT_01s0026g00640.t01	Wine grape	plastid	52.24	53.12
CDY69637	Canola	mitochondrion, plastid	46.6	51.94
Bra035413.1-P	Field mustard	mitochondrion, plastid	48.92	51.57
CDY61158	Canola	plastid	48.76	51.4
KRG99241	Soybean	plastid	49.09	51.12
AT1G59990.1	Thale cress	plastid	49.25	51.12
CDY64619	Canola	cytosol	15.26	47.92
TraesCS3A01G112800.1	Wheat	mitochondrion	21.06	19.84
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	18.91	17.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5A01G200900	EnsemblPlants:TraesCS5A01G200900.1	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr5A:+:406832444..406837668

Molecular Weight (calculated)

66391.2 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.173

Length

603 amino acids

Sequence
(BLAST)

001: MALSHLRHAP LALRLALPSI ACSSPATRRL LLFAPARPWR LLSTASKPRS LATAAAAEAD NTSAGTDGFF AEDSTSWKSL GISDRVASAL HGTGLERPSL
101: VQAACIPHVL TSNDVIVAAE TGSGKTHGYL VPLIEKLCTK SSSTEDGHSE NIAARTDNIV LVFCPNVMLC EQVVSMANSL LDVSGEPLKR AAAVCGPKGW
201: PAVRPDILVA TPAALLNYLF DYDPERRRRE KFLRSVKYIV FDEADMLLCG SFENQIIRLI HMLRFDEKLL SRAEDSGKEV ALEGSDEYHE DSGSESAEIS
301: DIDDENEDGH IQDGAVKVEN AHVGARRDWR RVRKVYRRSK QYVFVAATLP QSGKKTAGGV LKRMFPSAVW VSGAYLHRHN PRLERRWIEV TTDTQVDALL
401: DAVKYGLKSE VDPELGPNRT MVFTNTVDAA NSVSDILRRV GIPCVLYHRE SSLEERTANL QSFRENGGVL VCTDAAARGL DVPNVSHVIQ AEFAACAVDF
501: LHRVGRTARA GQSGIVTSLY TDANCDLVRA VRQAEELAQP VVRLFSVLLI IMSCSVTSCC TEILTENNLF SWYNQERAFS RKRSFRNKLK KQARLREPAT
601: LLS

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.