CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	85.5	72.73
CDY64619	Canola	cytosol	98.47	67.19
HORVU2Hr1G060040.2	Barley	plastid	24.43	24.06
CDY69637	Canola	mitochondrion, plastid	85.5	20.7
CDY61158	Canola	plastid	86.26	19.76
CDY05074	Canola	mitochondrion	38.17	18.94
AT1G59990.1	Thale cress	plastid	83.21	18.76
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	61.07	14.31
KRG99241	Soybean	plastid	61.83	13.99
Zm00001d020357_P003	Maize	plastid	60.31	13.76
TraesCS5B01G199500.1	Wheat	mitochondrion	58.78	13.53
TraesCS5D01G206600.1	Wheat	mitochondrion	58.78	13.53
KXG35557	Sorghum	mitochondrion	61.07	13.42
VIT_01s0026g00640.t01	Wine grape	plastid	60.31	13.32
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	58.78	12.88
GSMUA_Achr8P23590_001	Banana	mitochondrion	58.02	12.77
TraesCS5A01G200900.1	Wheat	mitochondrion	58.02	12.6
CDX73166	Canola	cytosol	16.79	11.46
CDY48909	Canola	cytosol	35.11	10.48
Os09t0383400-01	Rice	mitochondrion	34.35	9.04
CDX90733	Canola	plastid	38.17	8.05
CDX84964	Canola	cytosol	3.05	5.13
CDY24656	Canola	mitochondrion	24.43	5.02
CDY05302	Canola	plastid	24.43	4.98
CDY72046	Canola	cytosol	3.05	2.58
CDY20823	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY64618	EnsemblPlantsGene:GSBRNA2T00042432001	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	PFAM:PF00271	PFscan:PS51194	ProteinID:CDY64618	ProteinID:CDY64618.1
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EEA8D2	UniProt:A0A078JAN1	MapMan:35.1	:

Description

BnaCnng44360DBnaCnng44360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAN1]

Coordinates

chrLK034500:+:60..865

Molecular Weight (calculated)

14495.0 Da

IEP (calculated)

6.097

GRAVY (calculated)

-0.202

Length

131 amino acids

Sequence
(BLAST)

001: MVFANTVEAV EAVADILEKA SIQCYRYHKN HTLEERANIL ADFRENGGVF VCTDAAARRV DVPNVSHVIQ ADFSSCVVDF LHRIGRTARA GQYGTVTSLY
101: NEASRDLVEA IREAVKDGSA SGNCIQQEKR F

Best Arabidopsis Sequence Match ( AT1G59990.2 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRGK

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.