CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05074	Canola	mitochondrion	41.38	97.35
Bra000690.1-P	Field mustard	plastid	95.01	95.16
CDY72046	Canola	cytosol	23.67	94.84
AT4G09730.1	Thale cress	mitochondrion, plastid	85.35	85.35
CDY48909	Canola	cytosol	57.0	80.64
CDX84964	Canola	cytosol	8.86	70.51
CDY20823	Canola	cytosol	12.88	41.24
CDY64618	Canola	cytosol	8.05	38.17
CDY24505	Canola	cytosol	8.53	34.42
CDY64619	Canola	cytosol	9.34	30.21
CDX73166	Canola	cytosol	7.89	25.52
CDY69637	Canola	mitochondrion, plastid	19.65	22.55
CDY61158	Canola	plastid	20.29	22.03
CDY05302	Canola	plastid	22.71	21.93
CDY24656	Canola	mitochondrion	22.06	21.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DU77	EnsemblPlants:CDX90733	ProteinID:CDX90733	ProteinID:CDX90733.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00151421001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EF07FB	SEG:seg	:	:	:	:

Description

BnaA03g24130D

Coordinates

chrLK031864:+:229456..232612

Molecular Weight (calculated)

68600.9 Da

IEP (calculated)

10.693

GRAVY (calculated)

-0.472

Length

621 amino acids

Sequence
(BLAST)

001: MVGASRTILS LSLSSSSLFT FSRTPHVIPL LRLHKPSSIF RHALRRPLCA AAAAPTETNI AEPDQLKHTI LLERLRLRHL KESAAKPQQR PSSVVGIGEE
101: QNMKSKKKKM AESFEELGLS EEVMGALKEM NIEAPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAT LGKITKPRRP RTVVLCPTRE
201: LSEQVYRVAK SVSHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPDIRKFLAP LKQRALKTND
301: QGFQTVLVTA TMTTAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFVKLS GSEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQVSTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVIMFDFPK NSIDYLHRTG RTARMGAKGK VTSLISRKDQ MLAARIEEAM RNNESLEALT
501: NDNVRRDAAR TQITQEKGRS VKQIRAVSKQ RNTRDRGTSS SPPARPAGVK TPVRKSTSVR KSTSGRASSP PEKSTKPKRK ILKTVGSRSI AARGKKGSER
601: TGKKLSVVGF RGRSSAARPS S

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.