Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g045180.1.1 | Tomato | nucleus | 41.15 | 43.65 |
| CDY05302 | Canola | plastid | 70.31 | 21.0 |
| CDY24656 | Canola | mitochondrion | 67.19 | 20.25 |
| CDY64618 | Canola | cytosol | 11.46 | 16.79 |
| Os03t0108600-01 | Rice | mitochondrion, plastid | 52.08 | 15.6 |
| EER95670 | Sorghum | mitochondrion, plastid | 53.12 | 15.55 |
| Zm00001d048531_P001 | Maize | plastid | 52.6 | 15.42 |
| TraesCS3B01G568500.1 | Wheat | mitochondrion | 51.56 | 15.35 |
| TraesCS5A01G548800.2 | Wheat | mitochondrion, plastid | 52.08 | 15.2 |
| TraesCS4D01G359000.1 | Wheat | plastid | 52.08 | 15.13 |
| HORVU4Hr1G090840.3 | Barley | plastid | 52.08 | 14.97 |
| CDY24505 | Canola | cytosol | 11.98 | 14.94 |
| CDY64619 | Canola | cytosol | 14.06 | 14.06 |
| CDY05074 | Canola | mitochondrion | 17.19 | 12.5 |
| CDY48909 | Canola | cytosol | 23.96 | 10.48 |
| CDX84964 | Canola | cytosol | 3.65 | 8.97 |
| CDX90733 | Canola | plastid | 25.52 | 7.89 |
| CDY72046 | Canola | cytosol | 5.73 | 7.1 |
| CDY69637 | Canola | mitochondrion, plastid | 18.75 | 6.65 |
| CDY61158 | Canola | plastid | 17.71 | 5.94 |
| CDY20823 | Canola | cytosol | 1.56 | 1.55 |
Protein Annotations
| EnsemblPlants:CDX73166 | EnsemblPlantsGene:GSBRNA2T00103652001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF181 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDX73166 | ProteinID:CDX73166.1 |
| SEG:seg | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE4D5A | MapMan:35.1 | : |
Description
BnaC06g36140D
Coordinates
chrLK031797:-:2421158..2422342
Molecular Weight (calculated)
22104.6 Da
IEP (calculated)
7.007
GRAVY (calculated)
-0.322
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKIRTEKQL LQRNQLQEKA RNQLCSVTAL KETKDSSSMS TCLLDLLIVQ VLVDCSGDDN AEKTPETAFQ NKKASLLQII EENLVAKTII FCNKIETCRK
101: VENIFKRLDR NERQLHVLPF HAAFAQGTRL TNMEEFMSSH PEDHSLFLVC TDRASRGIDS SGVDHVVLFD FPRDPSEYVR RFSQNPFVFF MV
101: VENIFKRLDR NERQLHVLPF HAAFAQGTRL TNMEEFMSSH PEDHSLFLVC TDRASRGIDS SGVDHVVLFD FPRDPSEYVR RFSQNPFVFF MV
001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
Arabidopsis Description
RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.