Factsheet for HORVU4Hr1G090840.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G048520.1
HORVU2Hr1G069400.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT3G06980.1	HORVU2Hr1G069400.8	AT3G11590.1	21798944
AT3G06980.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G359000.1	Wheat	plastid	92.81	93.8
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	91.92	93.31
TraesCS3B01G568500.1	Wheat	mitochondrion	87.13	90.23
Os03t0108600-01	Rice	mitochondrion, plastid	69.46	72.39
Zm00001d048531_P001	Maize	plastid	68.86	70.23
EER95670	Sorghum	mitochondrion, plastid	67.66	68.9
Solyc11g045180.1.1	Tomato	nucleus	18.56	68.51
KRH51370	Soybean	nucleus	43.71	55.09
KRH60674	Soybean	nucleus	43.26	54.73
CDX73166	Canola	cytosol	14.97	52.08
GSMUA_Achr3P24670_001	Banana	plastid	48.95	49.03
VIT_05s0020g01130.t01	Wine grape	mitochondrion	48.2	45.54
Bra029613.1-P	Field mustard	plastid	47.31	42.47
AT3G06980.1	Thale cress	plastid	46.26	39.56
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	17.07	19.06
HORVU2Hr1G060040.2	Barley	plastid	3.44	17.29

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287Q5B6	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006968
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719
GO:GO:0009817	GO:GO:0009987	GO:GO:0016787	GO:GO:0071369	GO:GO:0071395	GO:GO:0071446
EnsemblPlantsGene:HORVU4Hr1G090840	EnsemblPlants:HORVU4Hr1G090840.3	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000B468C4D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:646201819..646206341

Molecular Weight (calculated)

73062.9 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.376

Length

668 amino acids

Sequence
(BLAST)

001: SRAHSLSRIT ELAAMDVAGA QARALPLLLG RPAASLRCTI SFSCGSARRS WAAAATTADG EDGGRGYERV AMDTPGAYRL VDRSTGKSVI VWGGVDDGED
101: PSVPSPAVLS RVTADRSASK GAANGGSSAG VGSFGRLKAQ KVQALARRSA AQLKREGTSS RTSIAQRNEP PSADSDEEGN NSGRRKFVPD PARRAKPNGD
201: SRDARTSAVR SLNSVLRQYK GDDDSDFSDE EPASGPKVWG KVADVTSYRR EDRKQKVPLD SGFFSRRSFK EIGCGDEILG ALRTFGFPQP SHIQAMAYAP
301: VLEGRSCIIA DQSGSGKTLA YLCPIVQNLR KEEAMGIHKP SPRNPRVVIL TPTAELSSQV LQNCRSISKS GVPFRSMVAT GGFRQKTQLE SLDQELDVLI
401: ATPGRFLYLL QEGFVQLNNL RCAVFDEVDI LFSEEGFEQV LHQLITIAPV TTQYLFVTAT LPLDIYNKVV ETFPDCEVLM GPSVHRTSAR LEEILVDCSG
501: NDNDEKNPET AFSNKRTALL KIIEESPVRK TIVFCNKIET CRKVENVLTR LDRKATQIKV LPFHAALDQA KRIANMKEFL KKQTTDSMFL VCTDRASRGI
601: DFTNVNHVVL FDYPRDPSEY VRRVGRTARG ASGDGKAFVF AVGKQVSLAR RVMERNLKGH PLHDVPCF

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.