Factsheet for HORVU5Hr1G059860.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G206600.1	Wheat	mitochondrion	90.3	94.9
TraesCS5B01G199500.1	Wheat	mitochondrion	88.96	93.5
TraesCS5A01G200900.1	Wheat	mitochondrion	90.3	89.55
Os09t0383400-01	Rice	mitochondrion	62.37	74.9
Zm00001d020357_P003	Maize	plastid	71.57	74.56
KXG35557	Sorghum	mitochondrion	72.74	72.99
HORVU2Hr1G060040.2	Barley	plastid	14.88	66.92
CDY24505	Canola	cytosol	16.05	62.34
CDY64618	Canola	cytosol	12.88	58.78
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	52.34	55.99
GSMUA_Achr8P23590_001	Banana	mitochondrion	54.68	54.96
VIT_01s0026g00640.t01	Wine grape	plastid	52.51	52.95
CDY69637	Canola	mitochondrion, plastid	47.16	52.13
KRG99241	Soybean	plastid	49.67	51.3
Bra035413.1-P	Field mustard	mitochondrion, plastid	48.83	51.05
CDY61158	Canola	plastid	48.66	50.87
AT1G59990.1	Thale cress	plastid	49.33	50.77
CDY64619	Canola	cytosol	15.55	48.44
HORVU4Hr1G090840.3	Barley	plastid	19.06	17.07

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287REN9	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU5Hr1G059860	EnsemblPlants:HORVU5Hr1G059860.2	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B479A76	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:467273418..467279119

Molecular Weight (calculated)

65962.4 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.266

Length

598 amino acids

Sequence
(BLAST)

001: RGLNCEPLEF FFFEHREPLE LSQDANDTMA LSHLRHAPLA LRLALPSIAC SSPATRRLLL FAPARPWRLL STASKPRSLA TAAAAAEADN TSGGTDGFFA
101: EDSTSWKSLG ISDRLASALH GTGLERPSLV QAACIPHVLT ANDVIVAAET GSGKTHGYLV PLIEKLCTKS SSTEDGDSEN IAARPDNIVL VFCPNVMLCE
201: QVVSMANSLL DVSGEPLKRA AAVCGPKGWP AVHPDILVAT PAALLNYLFD YDPERRRREK FLRSVKYIVF DEADMLLCGS FENQIIRLIH MLRFDEKLLS
301: RAEDSGKEVP LEGSDEYHED SGSESAEVSD IDEENEDGHI QDGVVKVENA HVGARRDWRR VRKVYRRSKQ YVFVAATLPQ SGKKTAGGVL KRMFPSAVWV
401: SGAYLHRHNP RLERRWIEVT TDTQVDALLD AVKYGLKSEV DPELGPKRTM VFTNTVDAAN SVSDILRRVG IPCILYHRES SLEERTANLQ SFRENGGVLV
501: CTDAAARGLD VPNVSHVIQA EFAACAVDFL HRVGRTARAG QSGIVTSLYT DANRDLVRAV RQAEELAQPV ERAFSRKRSF RNKLKKQARL REPATLLS

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.