Factsheet for Bra035413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61158	Canola	plastid	97.38	97.38
AT1G59990.1	Thale cress	plastid	76.05	74.87
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	55.24	56.53
VIT_01s0026g00640.t01	Wine grape	plastid	58.57	56.49
TraesCS5B01G199500.1	Wheat	mitochondrion	51.75	52.02
KRG99241	Soybean	plastid	52.62	51.99
TraesCS5D01G206600.1	Wheat	mitochondrion	51.4	51.67
Zm00001d020357_P003	Maize	plastid	50.52	50.35
TraesCS5A01G200900.1	Wheat	mitochondrion	51.57	48.92
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	51.05	48.83
GSMUA_Achr8P23590_001	Banana	mitochondrion	50.52	48.57
KXG35557	Sorghum	mitochondrion	50.17	48.15
Os09t0383400-01	Rice	mitochondrion	41.26	47.39
HORVU2Hr1G060040.2	Barley	plastid	10.66	45.86
Bra038370.1-P	Field mustard	cytosol	17.13	27.15
Bra000690.1-P	Field mustard	plastid	21.85	20.16
Bra029613.1-P	Field mustard	plastid	17.66	13.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra035413	EnsemblPlants:Bra035413.1	EnsemblPlants:Bra035413.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4F2W3	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002544AAE
SEG:seg	:	:	:	:	:

Description

AT1G59990 (E=1e-261) | DEAD/DEAH box helicase, putative (RH22)

Coordinates

chrA01:-:16512431..16514946

Molecular Weight (calculated)

63339.3 Da

IEP (calculated)

7.084

GRAVY (calculated)

-0.275

Length

572 amino acids

Sequence
(BLAST)

001: MILSRSVSVL HSCRISSAPK LISHKLKVSF PLAYGSSALI SLNRSEVKWV RVFASATETE TEVERKGNDT FFADQAVSWK SLGLSDKVSV ALRDSGFGRP
101: SLTQAVCIPS ILSGKDVVVA AETGSGKTHG YLAPIIHQLT NTNTPLDSEG EERRVPLKTI SLVLCPNVML CEQVVRMVNG LLGEDGHPLL RVEAVCGSQG
201: WPDKQPDIIV STPAALLNNI EPKRNRRVEF LRSVKYVVFD EADMLLCGSF QNQIIRLINM LRFDEKQVSR LATSKFGKPL EIDAESSAQF DLENEDDADF
301: EEDGSISDEE EEEYLEDTTQ IPTVENGAGA DIRKGWRRVR KIYTRSKQYI FIAATLPVNG KKTAGGLLKH MFQDAVWVSG NFLHRNSPRL KQKWVEVTVD
401: TQVDALIEAV NNSSTDRTMV FANTVEAVEA VADILEKASI QCYRYHKNHT LEERANILAD FRENGGVFVC TDAAARGVDV PNVSHVIQAD FSSSAVDFLH
501: RIGRTARAGQ YGTVTSLYTE ANRDLVEAIR EAVKTGQPVE TAFSRKRGFR NKLKKRAFLK AGEAKESQAV RA

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.