Factsheet for VIT_01s0026g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	17.03	65.58
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	57.67	61.18
CDY64618	Canola	cytosol	13.32	60.31
KRG99241	Soybean	plastid	57.34	58.72
Bra035413.1-P	Field mustard	mitochondrion, plastid	56.49	58.57
CDY61158	Canola	plastid	56.32	58.39
CDY69637	Canola	mitochondrion, plastid	52.61	57.67
TraesCS5B01G199500.1	Wheat	mitochondrion	53.96	56.24
TraesCS5D01G206600.1	Wheat	mitochondrion	53.79	56.06
AT1G59990.1	Thale cress	plastid	54.47	55.59
Zm00001d020357_P003	Maize	plastid	53.79	55.57
Os09t0383400-01	Rice	mitochondrion	45.19	53.82
GSMUA_Achr8P23590_001	Banana	mitochondrion	53.63	53.45
KXG35557	Sorghum	mitochondrion	52.95	52.68
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	52.95	52.51
TraesCS5A01G200900.1	Wheat	mitochondrion	53.12	52.24
CDY64619	Canola	cytosol	16.02	49.48
HORVU2Hr1G060040.2	Barley	plastid	10.96	48.87
VIT_18s0001g02530.t01	Wine grape	plastid	19.22	17.95
VIT_05s0020g01130.t01	Wine grape	mitochondrion	20.07	16.83

Protein Annotations

EntrezGene:100253463	wikigene:100253463	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI32098	ProteinID:CBI32098.3
UniProt:D7TNM5	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596002	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100253463
wikigene:LOC100253463	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0001982A28	ArrayExpress:VIT_01s0026g00640	EnsemblPlantsGene:VIT_01s0026g00640	EnsemblPlants:VIT_01s0026g00640.t01	unigene:Vvi.7046
RefSeq:XP_002266408	RefSeq:XP_002266408.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:9410198..9423702

Molecular Weight (calculated)

65845.6 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.272

Length

593 amino acids

Sequence
(BLAST)

001: MTVHRCASML HFSRLSSPPR LLSPFKSCYS SLLDRSSSAP SSSLRIGLYW LDSPRRRRTR AFGTASAASQ DRNGAETFFA DQGVSWASLG VSDRLTRALS
101: TIGIERPSLV QAACIPYILS GNDVVVAAET GSGKTHGYLV PLIDKLCGTP NDSVDASTDQ ESRHLHQLCL VLCPNVMLCE QVVQMANCLC GDNGEPLLRV
201: VAVCGRQGWP VKEPDIIVST PAAFLNNLNA IDPEKQRRSN FLRGVKCVVF DEADMLLCGS FQNQVIRLID MLRFDEKILS RIKKSVPDKQ MELESDSMLH
301: FYSESEKDEE ETEEQTEIIS DEEENVVGEP VVEGFTEEIE VGSIKKKDWR RVRKNYERSK QYIFVAATLP VNGKKTAGGV LKRMFPDAHW VSGGYLHCHN
401: PRLEQKWIEV TVDTQVDALI DAVKQGFRSK VLDSGVGVSR TMVFANTVEA VEAISKILHR AGVECFRYHR DSSLEERAKT LVDFQQKGGV LVCTDSAARG
501: LDIPNISHVI QADFATSALD FLHRVGRTAR AGQFGLVTSL YTESNRDLVA AIRQADKLGQ PVDAAFSRKR SFRNKLKKRG TNKLGDVEER VLA

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.