CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	17.79	66.88
CDY64618	Canola	cytosol	13.99	61.83
VIT_01s0026g00640.t01	Wine grape	plastid	58.72	57.34
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	54.06	55.99
CDY69637	Canola	mitochondrion, plastid	50.26	53.79
AT1G59990.1	Thale cress	plastid	53.54	53.36
CDY61158	Canola	plastid	52.5	53.15
Bra035413.1-P	Field mustard	mitochondrion, plastid	51.99	52.62
TraesCS5D01G206600.1	Wheat	mitochondrion	51.3	52.2
TraesCS5B01G199500.1	Wheat	mitochondrion	51.3	52.2
CDY64619	Canola	cytosol	17.1	51.56
Zm00001d020357_P003	Maize	plastid	49.57	50.0
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	51.3	49.67
KXG35557	Sorghum	mitochondrion	50.6	49.16
TraesCS5A01G200900.1	Wheat	mitochondrion	51.12	49.09
Os09t0383400-01	Rice	mitochondrion	41.62	48.39
GSMUA_Achr8P23590_001	Banana	mitochondrion	48.53	47.23
HORVU2Hr1G060040.2	Barley	plastid	10.71	46.62
KRH51370	Soybean	nucleus	21.07	23.02
KRH60674	Soybean	nucleus	20.73	22.73
KRH70245	Soybean	nucleus	20.55	18.71
KRH08609	Soybean	plastid	10.36	16.09
KRH70239	Soybean	mitochondrion	9.33	14.48

Protein Annotations

EntrezGene:100789323	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02011012	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_18G132200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K7MRU0	EnsemblPlants:KRG99241	ProteinID:KRG99241	ProteinID:KRG99241.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000233E2E4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:18532053..18543411

Molecular Weight (calculated)

64613.2 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.245

Length

579 amino acids

Sequence
(BLAST)

001: MIVTRSALML HLQNPPIRYH FFSHFSYAPT FPTLFKPRPF SPTTPRQAQT RTFVSAVASS SSAAHGSNGR DTFFAEENVS WSSLGLSDTI SRALSNIGLN
101: RPSLVQASSV PSVLLGKDVI IAAETGSGKT YSYLVPLIDK LRDAQEHSLH AVLDQKVTSP QNVLLVLCPN VQLCEQVVRM ANSLCRDDGE TIVSVAAICG
201: KQGWPIREPD VIVTTPAALL NYVDLDRTRR MEFMRGVKYV VFDEADLLLC GSFQNKVIRL INLLRFDEKL LSRSKKSVAE FPMKQEFSLS SEDAFEGEEE
301: LQTEAISEDD DNDKEDIVDI NNEAGNVKLR DWRRVRKNYE RSKQYVFVAA TLPVNGKKTA GGVLKYMFPD AEWVCGNYLH CHNPRLEQKW IEVMVDTQVD
401: ELIKAVNHRF RSEDLVNAGG IHRTMVFANT VEAVEAVAKI LLRSGIECSR YHKNCTLEER AQTLVDFQDK GGVLVCTDAA ARGVDIPNVL HVIQADFATS
501: AVDFLHRVGR TARAGQIGLV TSMCTESNRE LVNAVRRAGE LDQPVETAFS RKRSFRNKLK KRGTNKVRDS ATIKESVLG

Best Arabidopsis Sequence Match ( AT1G59990.2 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRGK

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.