Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24505 | Canola | cytosol | 24.61 | 92.86 |
| CDY64618 | Canola | cytosol | 18.76 | 83.21 |
| CDY69637 | Canola | mitochondrion, plastid | 74.01 | 79.48 |
| CDY61158 | Canola | plastid | 75.22 | 76.4 |
| Bra035413.1-P | Field mustard | mitochondrion, plastid | 74.87 | 76.05 |
| CDY64619 | Canola | cytosol | 22.03 | 66.67 |
| Solyc05g006130.2.1 | Tomato | mitochondrion, plastid | 52.84 | 54.92 |
| VIT_01s0026g00640.t01 | Wine grape | plastid | 55.59 | 54.47 |
| KRG99241 | Soybean | plastid | 53.36 | 53.54 |
| TraesCS5B01G199500.1 | Wheat | mitochondrion | 51.29 | 52.37 |
| TraesCS5D01G206600.1 | Wheat | mitochondrion | 50.95 | 52.02 |
| Zm00001d020357_P003 | Maize | plastid | 48.88 | 49.48 |
| HORVU5Hr1G059860.2 | Barley | cytosol, peroxisome | 50.77 | 49.33 |
| TraesCS5A01G200900.1 | Wheat | mitochondrion | 51.12 | 49.25 |
| KXG35557 | Sorghum | mitochondrion | 49.4 | 48.15 |
| Os09t0383400-01 | Rice | mitochondrion | 40.79 | 47.59 |
| GSMUA_Achr8P23590_001 | Banana | mitochondrion | 48.71 | 47.56 |
| HORVU2Hr1G060040.2 | Barley | plastid | 10.84 | 47.37 |
| AT4G09730.1 | Thale cress | mitochondrion, plastid | 19.62 | 18.36 |
| AT3G06980.1 | Thale cress | plastid | 18.93 | 14.08 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:842293 | ProteinID:AAD14475.1 | ProteinID:AEE33647.1 | EMBL:AF424570 |
| EMBL:AJ010471 | ArrayExpress:AT1G59990 | EnsemblPlantsGene:AT1G59990 | RefSeq:AT1G59990 | TAIR:AT1G59990 | RefSeq:AT1G59990-TAIR-G |
| EnsemblPlants:AT1G59990.1 | TAIR:AT1G59990.1 | EMBL:AY142022 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_176207.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF210 | UniProt:Q944S1 | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000A81A7 | EMBL:Y11190 | SEG:seg |
Description
RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
Coordinates
chr1:-:22090238..22093385
Molecular Weight (calculated)
64750.9 Da
IEP (calculated)
5.942
GRAVY (calculated)
-0.308
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.