CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	26.75	99.35
Bra035413.1-P	Field mustard	mitochondrion, plastid	97.38	97.38
CDY69637	Canola	mitochondrion, plastid	84.27	89.09
CDY64618	Canola	cytosol	19.76	86.26
AT1G59990.1	Thale cress	plastid	76.4	75.22
CDY64619	Canola	cytosol	22.73	67.71
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	55.24	56.53
VIT_01s0026g00640.t01	Wine grape	plastid	58.39	56.32
KRG99241	Soybean	plastid	53.15	52.5
TraesCS5B01G199500.1	Wheat	mitochondrion	51.57	51.85
TraesCS5D01G206600.1	Wheat	mitochondrion	51.22	51.49
Zm00001d020357_P003	Maize	plastid	50.35	50.17
TraesCS5A01G200900.1	Wheat	mitochondrion	51.4	48.76
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	50.87	48.66
GSMUA_Achr8P23590_001	Banana	mitochondrion	50.17	48.24
KXG35557	Sorghum	mitochondrion	50.0	47.99
Os09t0383400-01	Rice	mitochondrion	41.26	47.39
HORVU2Hr1G060040.2	Barley	plastid	10.66	45.86
CDY72046	Canola	cytosol	6.99	25.81
CDY48909	Canola	cytosol	18.53	24.15
CDX84964	Canola	cytosol	2.97	21.79
CDY05074	Canola	mitochondrion	9.79	21.21
CDX90733	Canola	plastid	22.03	20.29
CDY20823	Canola	cytosol	6.12	18.04
CDX73166	Canola	cytosol	5.94	17.71
CDY24656	Canola	mitochondrion	18.18	16.33
CDY05302	Canola	plastid	17.13	15.24

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078J4M5	UniProt:A0A078J4M5	EnsemblPlants:CDY61158	ProteinID:CDY61158
ProteinID:CDY61158.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00030634001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EDBEF9	SEG:seg	:	:	:

Description

BnaC01g43200DBnaC01g43200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4M5]

Coordinates

chrLK033961:+:5587..8373

Molecular Weight (calculated)

63259.3 Da

IEP (calculated)

7.122

GRAVY (calculated)

-0.268

Length

572 amino acids

Sequence
(BLAST)

001: MILSRSVSVL HSCRISSAPK LISHKLKVSF PLAHGSSALL SLNRSEGKWV RVFASATETE AEVERKGNDT FFADQAVSWK SLGLSDKVSV ALRDSGFGRP
101: SLTQAVCIPS ILSGKDVVVA AETGSGKTHG YLAPIIHQLT NTNTALDSEA EERRMPLKTI SLVLCPNVML CEQVVRMVNG LLGEDGHPLL RVEAVCGSQG
201: WPDKQPDIIV STPAALLNNI EPKRNRRVEF LRSVKYVVFD EADMLLCGSF QNQIIRLINM LRFDEKQVSR LVTSKFGKPL EIDADALAQF DSDNEDDADF
301: EEDGSISDEE EEEYLEDTTQ IPTVENGAGA DIRKGWRRVR KIYTRSKQYI FIAATLPVNG KKTAGGLLKH MFQDAVWVTG NFLHRNSPRL KQKWVEVTVD
401: TQVDALIEAV NNSSTDRTMV FANTVEAVEA VADILEKASI QCYRYHKNHT LEERANILAD FRENGGVFVC TDAAARGVDV PNVSHVIQAD FSSSAVDFLH
501: RIGRTARAGQ YGTVTSLYTE ANRDLVEAIR EAVKTGQPVE TAFSRKRGFR NKLKKRAFLK AGEAKESQAV RA

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.