CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64618	Canola	cytosol	72.73	85.5
CDY64619	Canola	cytosol	74.03	59.38
HORVU2Hr1G060040.2	Barley	plastid	31.82	36.84
CDY61158	Canola	plastid	99.35	26.75
AT1G59990.1	Thale cress	plastid	92.86	24.61
CDY69637	Canola	mitochondrion, plastid	77.27	22.0
CDY05074	Canola	mitochondrion	34.42	20.08
KRG99241	Soybean	plastid	66.88	17.79
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	64.29	17.71
Zm00001d020357_P003	Maize	plastid	63.64	17.07
VIT_01s0026g00640.t01	Wine grape	plastid	65.58	17.03
TraesCS5D01G206600.1	Wheat	mitochondrion	62.34	16.87
TraesCS5B01G199500.1	Wheat	mitochondrion	62.34	16.87
GSMUA_Achr8P23590_001	Banana	mitochondrion	64.29	16.64
KXG35557	Sorghum	mitochondrion	64.29	16.61
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	62.34	16.05
TraesCS5A01G200900.1	Wheat	mitochondrion	61.69	15.75
CDX73166	Canola	cytosol	14.94	11.98
CDY48909	Canola	cytosol	31.82	11.16
Os09t0383400-01	Rice	mitochondrion	29.22	9.04
CDX90733	Canola	plastid	34.42	8.53
CDY24656	Canola	mitochondrion	22.73	5.49
CDY05302	Canola	plastid	22.73	5.44
CDX84964	Canola	cytosol	2.6	5.13
CDY72046	Canola	cytosol	2.6	2.58
CDY20823	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY24505	EnsemblPlantsGene:GSBRNA2T00026804001	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	PFAM:PF00271	PFscan:PS51194	ProteinID:CDY24505	ProteinID:CDY24505.1
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EF1151	UniProt:A0A078GDC2	MapMan:35.1	:

Description

BnaA01g22090DBnaA01g22090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDC2]

Coordinates

chrLK032160:-:107748..108487

Molecular Weight (calculated)

16989.1 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.317

Length

154 amino acids

Sequence
(BLAST)

001: MVFANTVEAV EAVADILEKA SIQCYRYHKN HTLEERANIL ADFRENGGVF VCTDAAARGV DVPNVSHVIQ ADFSSSAVDF LHRIGRTARA GQYGTVTSLY
101: TEANRDLVEA IREAVKTGQP VETAFSRKRG FRNKLKKRAF LKAGEAKESQ AVRA

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.