CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX73866
CDX88802
CDX92367
CDY01038
CDY02344
CDY08511
CDY09519
CDY12454
CDY52188
CDY56601
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	CDY02344	AT1G30860.1	21798944
AT3G06980.1	CDY09519	AT1G30860.1	21798944
AT3G06980.1	CDY12454	AT1G30860.1	21798944
AT3G06980.1	CDY52188	AT1G30860.1	21798944
AT3G06980.1	CDX73866	AT3G11590.1	21798944
AT3G06980.1	CDY01038	AT3G11590.1	21798944
AT3G06980.1	CDY08511	AT3G11590.1	21798944
AT3G06980.1	CDY56601	AT3G11590.1	21798944
AT3G06980.1	CDX70996	AT5G22310.1	21798944
AT3G06980.1	CDX88802	AT5G22310.1	21798944
AT3G06980.1	CDX92367	AT5G22310.1	21798944
AT3G06980.1	CDY67997	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05302	Canola	plastid	74.1	73.41
Bra029613.1-P	Field mustard	plastid	81.0	69.35
CDX73166	Canola	cytosol	20.25	67.19
KRH60674	Soybean	nucleus	48.51	58.52
KRH51370	Soybean	nucleus	48.51	58.3
AT3G06980.1	Thale cress	plastid	63.58	51.86
VIT_05s0020g01130.t01	Wine grape	mitochondrion	54.0	48.66
GSMUA_Achr3P24670_001	Banana	plastid	46.94	44.83
Solyc11g045190.1.1	Tomato	nucleus	29.51	38.21
CDY72046	Canola	cytosol	8.16	33.55
CDY48909	Canola	cytosol	18.52	26.88
CDY64618	Canola	cytosol	5.02	24.43
CDX84964	Canola	cytosol	2.83	23.08
CDY24505	Canola	cytosol	5.49	22.73
CDX90733	Canola	plastid	21.51	22.06
CDY64619	Canola	cytosol	6.59	21.88
CDY20823	Canola	cytosol	5.97	19.59
CDY69637	Canola	mitochondrion, plastid	16.17	19.04
CDY61158	Canola	plastid	16.33	18.18
CDY05074	Canola	mitochondrion	7.22	17.42

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GH17	UniProt:A0A078GH17	EnsemblPlants:CDY24656	ProteinID:CDY24656
ProteinID:CDY24656.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00027033001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE7925	SEG:seg	:	:	:

Description

BnaA05g30550DBnaA05g30550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH17]

Coordinates

chrLK032162:-:223189..226473

Molecular Weight (calculated)

70400.4 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.438

Length

637 amino acids

Sequence
(BLAST)

001: MLARAPPPSV TFPARNKICN RREIVRLFRY GGGGGVTSCS SEVVSDSTDD GFIVIKAEHH EKELYPPPPS DLASSTPSES SRRDVSRSRG VTGSFGRLKA
101: QKVKALVDRS QTNERGSNGY AAANSRGRGD RPSLAKDLDK FKGRDRAVGE VSKFRDNERA GSRSSYSKDS SAANSRGRED RRFVNKEASA GNSRGWGDRR
201: SVVYARDIED WRERGNRTKA TRETGFFSRK SFAEVGCSEG MMKALKENNF DRPAHIQALA FAPVVDGKSC IIADQSGSGK TLAYLVPVIQ RLREEELQGL
301: SKSSSGCPRV IVLVPTAELA SQVLANCRLI SKSGVPFRSM VVTGGFKQRT QLENLEQGVD VLIATPGRFT YLMNEGILGL SNLRCAILDE VDILFGDEEF
401: ESALQNLISS SPVTAQYLFV TATLPLEIYN KLVEVFPDCE VVMGPRVHRV SNALEEVLVD CSGDDNAEKT PETAFQNKKA ALLQIIEENP VAKTIIFCNK
501: IETCRKVENI FKRLDRNERQ LHVLPFHAAL AQGARLANME EFTSSHPENH SLFLVCTDRA SRGIDFSGVD HVVLFDFPRD PSEYVRRVGR TARGARGEGK
601: AFVFVVGKQV TLARRIIERN QKGHPVHDVP NAYEFTT

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.