CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038370.1-P	Field mustard	cytosol	72.89	88.64
CDY72046	Canola	cytosol	30.98	87.74
CDX84964	Canola	cytosol	11.62	65.38
CDX90733	Canola	plastid	80.64	57.0
AT4G09730.1	Thale cress	mitochondrion, plastid	77.9	55.07
CDY05074	Canola	mitochondrion	28.93	48.11
CDY64618	Canola	cytosol	10.48	35.11
CDY20823	Canola	cytosol	14.58	32.99
CDY24505	Canola	cytosol	11.16	31.82
CDY64619	Canola	cytosol	11.85	27.08
CDX73166	Canola	cytosol	10.48	23.96
CDY69637	Canola	mitochondrion, plastid	23.92	19.41
CDY61158	Canola	plastid	24.15	18.53
CDY24656	Canola	mitochondrion	26.88	18.52
CDY05302	Canola	plastid	26.65	18.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IHM7	UniProt:A0A078IHM7	EnsemblPlants:CDY48909	ProteinID:CDY48909
ProteinID:CDY48909.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00091993001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EEEA93	SEG:seg	:	:	:

Description

BnaA09g22860DBnaA09g22860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHM7]

Coordinates

chrLK032800:-:106739..113990

Molecular Weight (calculated)

48862.0 Da

IEP (calculated)

6.976

GRAVY (calculated)

-0.216

Length

439 amino acids

Sequence
(BLAST)

001: MGALKPDLID EVMGALKEMN IEVPTDIQCI GVPAVMERKS VVLGSHTGSG KTLAYLLPIV QKMREDEASL GKITKPRRPR TIALCPTREL SEQVYRVPKS
101: VSHHARFRSI LVSGGSRIRP HEDSLNNAID MVVGTPGSFL QHVEEGNIVY GDIAYLVLDE ADTMFDRGFG PDIRKFLAPL KQRALKTNDQ GFQTVLVTAT
201: MTTAVQKLVD EEFQGIEHLR TSALHKKIAN ARHDFVKLSG SEDKLEALLQ VNCIIKILIF EEVLEPSCAV DHYLSENQVS TVNYHGEVPA EQRVDNLKKF
301: KDEEGDCPTL VCTDLAARGL DLDVDHVIMF DFPKNSIDYL HRTGRTARMG AKGKVTSLIS RKDQMLAARI DEAMRNNESL EALTNDNILS IESREVSLQD
401: CRIALLKSGG GAATVREKKG TACTSFFLFL HKKRFCFCY

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.