Factsheet for Bra038370.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48909	Canola	cytosol	88.64	72.89
GSMUA_Achr9P28700_001	Banana	nucleus	69.53	51.43
Bra000690.1-P	Field mustard	plastid	87.26	50.81
AT4G09730.1	Thale cress	mitochondrion, plastid	83.93	48.79
VIT_18s0001g02530.t01	Wine grape	plastid	74.52	42.36
Os01t0184500-01	Rice	mitochondrion	72.58	41.92
EES00166	Sorghum	mitochondrion	70.91	41.83
Solyc12g056740.1.1	Tomato	nucleus	72.85	41.35
KRH70245	Soybean	nucleus	72.3	41.04
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	71.75	40.6
TraesCS3B01G131400.1	Wheat	mitochondrion	70.91	40.44
TraesCS3A01G112800.1	Wheat	mitochondrion	70.91	40.0
KRH70239	Soybean	mitochondrion	19.11	18.5
KRH08609	Soybean	plastid	18.56	17.96
Bra035413.1-P	Field mustard	mitochondrion, plastid	27.15	17.13
Bra029613.1-P	Field mustard	plastid	27.98	13.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra038370	EnsemblPlants:Bra038370.1	EnsemblPlants:Bra038370.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FBA4	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025423AF
SEG:seg	:	:	:	:	:

Description

AT4G09730 (E=5e-076) | DEAD/DEAH box helicase, putative

Coordinates

chrA09:+:11213485..11221230

Molecular Weight (calculated)

40263.1 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.414

Length

361 amino acids

Sequence
(BLAST)

001: MGALKPDLID EVMGALKEMN IEVPTEIQCI GVPAVMERKS VVLGSHTGSG KTLAYLLPIV QVYRVPKSVS HHARFRSILV SGGSRIRPQE DSLDNAIDMV
101: VGTPGSFLQH IEEGNIVYGD IAYLVLDEAD TMFDRGFGPD IRKFLAPLKQ RALKTNDQGF QTVLVTATMT TAVQKLVDEE FQGIEHLRTS TLHKNIANAR
201: HDFVKLSGSE DKLEALLQVL EPSRAVDHYL SENQVSTVNY HGEVPAEERV DNLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVIMFDFPK NSIDYLHRTG
301: RTARMGGKAR IDEAMRNNES LEALTNDNVR RDSARTQITQ GKGRNLKQIR AVSKQRNSRE R

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.