Factsheet for VIT_18s0001g02530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72046	Canola	cytosol	18.43	75.48
Bra038370.1-P	Field mustard	cytosol	42.36	74.52
GSMUA_Achr9P28700_001	Banana	nucleus	56.38	73.36
Solyc12g056740.1.1	Tomato	nucleus	65.04	64.94
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	65.2	64.89
EES00166	Sorghum	mitochondrion	61.73	64.05
AT4G09730.1	Thale cress	mitochondrion, plastid	61.57	62.96
Bra000690.1-P	Field mustard	plastid	61.42	62.9
KRH70245	Soybean	nucleus	62.99	62.89
Os01t0184500-01	Rice	mitochondrion	61.89	62.88
TraesCS3B01G131400.1	Wheat	mitochondrion	60.79	60.98
TraesCS3A01G112800.1	Wheat	mitochondrion	60.63	60.16
VIT_05s0020g01130.t01	Wine grape	mitochondrion	22.52	20.23
VIT_01s0026g00640.t01	Wine grape	plastid	17.95	19.22

Protein Annotations

EntrezGene:100247785	wikigene:100247785	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB52341	ProteinID:CCB52341.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HJE2	EMBL:FN595772	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100247785	wikigene:LOC100247785
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
TIGR:TC66200	UniParc:UPI00015CD18A	ArrayExpress:VIT_18s0001g02530	EnsemblPlantsGene:VIT_18s0001g02530	EnsemblPlants:VIT_18s0001g02530.t01	unigene:Vvi.11339
RefSeq:XP_002263640	RefSeq:XP_002263640.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18_random:+:2799008..2807120

Molecular Weight (calculated)

69178.0 Da

IEP (calculated)

10.778

GRAVY (calculated)

-0.346

Length

635 amino acids

Sequence
(BLAST)

001: MGGTGRTLVG LSLSSNLFSF SLLSPSMRRP LYKLAIPTTT RVFLGFKPIS CSSSSSTTAI EADQALQPMR HSILLEKLRF RHLKDSAKSP QTRSPPLSTG
101: GKEGEPGSMK SQKKPKMVSS FEELGLSEEV MAAVRETGIS VPTEIQCIGV PAVLEGRSVV LGSHTGSGKT LAYMLPLVQL LRRDEALSGV LMKPRRPRAV
201: VLCPTRELSE QVFRVAKSIS HHARFRSTMV SGGGRLRPQE DSLNIPIDMV VGTPGRVLQH IEEGNMVYGE IKYLVLDEAD TMFDRGFGPD IRKFLAPLKN
301: RASKSDDQGF QTVLVTATMT KAVQKLIDEE FQGIVHLRTS TLHKKIASAR HDFIKLSGSE NKLEALLQVL EPSLAKGNKV MVFCNTLNSS RAVDHFLGEN
401: QIFTVNYHGE VPAEQRVENL KKFKTEDGDC PTLVCTDLAA RGLDLDVDHV IMFDFPLNSI DYLHRTGRTA RMGAKGKVTS LVAKKDLLLA TRIEEAIRKN
501: ESLEALTADN LRRDVARAKI SEQKAKNANL VKVSKQKNKT KVESMKSSSK AASTQTSGRK TLGGKSGKVS PPTKSKKTVK ILKPSKSSSA GGGSKRALSG
601: VMKRADSKRS SSVKSSTSKL SVVGFRGRSS SSIKN

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.