Factsheet for Solyc12g056740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	97.01	96.71
CDY72046	Canola	cytosol	18.24	74.84
Bra038370.1-P	Field mustard	cytosol	41.35	72.85
GSMUA_Achr9P28700_001	Banana	nucleus	54.09	70.49
VIT_18s0001g02530.t01	Wine grape	plastid	64.94	65.04
EES00166	Sorghum	mitochondrion	59.91	62.25
KRH70245	Soybean	nucleus	61.79	61.79
AT4G09730.1	Thale cress	mitochondrion, plastid	59.75	61.19
Bra000690.1-P	Field mustard	plastid	59.59	61.13
Os01t0184500-01	Rice	mitochondrion	58.49	59.52
TraesCS3B01G131400.1	Wheat	mitochondrion	58.49	58.77
TraesCS3A01G112800.1	Wheat	mitochondrion	58.18	57.81
Solyc11g045180.1.1	Tomato	nucleus	9.75	34.25
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	18.71	21.29
Solyc11g045190.1.1	Tomato	nucleus	13.52	17.48

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DG05	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g056740.1	EnsemblPlants:Solyc12g056740.1.1
UniParc:UPI000276A04C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:62817358..62823403

Molecular Weight (calculated)

70081.6 Da

IEP (calculated)

10.574

GRAVY (calculated)

-0.476

Length

636 amino acids

Sequence
(BLAST)

001: MGVTGRALLN LSLLPFRFPL TRNPLLPQPR RVYLGFRPLS STTTTAPSYA AVAEEEDALQ PVKHSILLER LRLRHLRESP KPNSEIKQLV RKQVEVDDGG
101: VKKSKKKAVA SSFEELGLTE EVMGALGEMG ISEPTEIQSI GIPAVIEGKS VVLGSHTGSG KTLAYMLPIV QLLRRDEELD GMLMKPRRPR AVVLCPTREL
201: CEQVFRVAKS ISHHARFRST MVSGGGRLRP QEDCLASPID MIVGTPGRVL QHIEEGNMVY GDIRYLVLDE ADTMFDRGFG PDIRKFLAPL KNRASKTDDE
301: GFQTVLVTAT MTKAVQKLVD EEFQGIEHLR TSSLHKKIAS ARHDFIKLSG SENKMEALLQ VLEPSLAKGN RVMVFCNTLN SSRAVDHFLN ETQISTVNYH
401: GEVPAEQRVE NLAKFKSNEG DCPTLVCTDL AARGLDLDVD HVIMFDFPKN SIDYLHRTGR TARMGAKGKV TSLIAKKDLL LANCIEEAIK KNESLESLSV
501: DGIKRDNARS RITEQKDKRE KSVKVSNSRG KATASTGKSS SVTRKTIDSK RSAKTTDSKR SPKTTDSKRS PGTKFGKVPA KSKPKIAMKV SKKTSSSTGK
601: RRVDSRSSSV STKKLNVVGF RGRSSSSSNN TRVKSA

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.