Factsheet for GSMUA_Achr9P28700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72046	Canola	cytosol	22.75	71.61
Bra038370.1-P	Field mustard	cytosol	51.43	69.53
EES00166	Sorghum	mitochondrion	71.93	57.35
VIT_18s0001g02530.t01	Wine grape	plastid	73.36	56.38
Os01t0184500-01	Rice	mitochondrion	71.93	56.16
Solyc12g056740.1.1	Tomato	nucleus	70.49	54.09
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	70.7	54.08
KRH70245	Soybean	nucleus	69.67	53.46
Bra000690.1-P	Field mustard	plastid	67.83	53.39
TraesCS3B01G131400.1	Wheat	mitochondrion	69.06	53.24
TraesCS3A01G112800.1	Wheat	mitochondrion	69.26	52.81
AT4G09730.1	Thale cress	mitochondrion, plastid	67.01	52.66
GSMUA_Achr3P24670_001	Banana	plastid	25.41	18.59
GSMUA_Achr8P23590_001	Banana	mitochondrion	22.34	18.32

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0070180	GO:GO:0080158
GO:GO:1901259	EnsemblPlantsGene:GSMUA_Achr9G28700_001	EnsemblPlants:GSMUA_Achr9P28700_001	EnsemblPlants:GSMUA_Achr9T28700_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M0U4C7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000296C347	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 39 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28700_001]

Coordinates

chr9:-:32596799..32605095

Molecular Weight (calculated)

53431.9 Da

IEP (calculated)

10.607

GRAVY (calculated)

-0.326

Length

488 amino acids

Sequence
(BLAST)

001: MEISVPTEIQ CIAVPAVLEG KSVVLGSHTG SGKTLAYMLP IVQLMRQDEA LSGVLMRPRR PRAVVLCPTR ELCEQVFRVA KSISHHARFR STMISGGGRL
101: RPQEDSLSEP IDMVVGTPGR ILQHINDGNM VYGDIKFLVL DEADTMFDQG FGPDIRKFLG PLKNRAAKPG DHGFQTVLVT ATMTKAVQNL VDEEFQGIIH
201: LRTSSFQKKV ASARHDFIKL SGAENKLEAL LQVLEPSLSK GNRVMVFCNT LNSSRAVDHF LTENQIFTVN YHGEVPAEER VENLRKFKSE DGDCPTLVCT
301: DLAARGLDLD VDHVIMFDFP LNSIDYLHRT GRTARMGAKG KVTSLVAKKD IPLATRIEEA MKKNESLEAL SANSVRRDAF ISKQIDQKYK AKVILTKSSS
401: KAGKKATSAQ KSVAASKGKA SASTKSKTTV AISKPIKSPV GGKREPTRGN KLQQGRKSVI TRIPKSKLSV VGFRGRSSAG RKQSPKPT

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.